Strain Fitness in Sinorhizobium meliloti 1021 around SMc00090

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
1,033,852	+				+0.4
1,033,855	-				-1.4
1,033,968	+				+0.2
1,033,969	-				+0.2
1,033,993	+				-1.0
1,034,037	-				+0.1
1,034,153	+				-0.6
1,034,153	+				-0.5
1,034,154	-				-0.7
1,034,200	-		SMc00029	0.10	-0.9
1,034,211	-		SMc00029	0.18	+0.2
1,034,257	+		SMc00029	0.50	+0.1
1,034,434	+		SMc00089	0.28	+0.4
1,034,434	+		SMc00089	0.28	-0.0
1,034,434	+		SMc00089	0.28	+0.3
1,034,435	-		SMc00089	0.28	+0.2
1,034,435	-		SMc00089	0.28	+0.2
1,034,435	-		SMc00089	0.28	-0.1
1,034,632	+		SMc00089	0.83	+0.3
1,034,633	-		SMc00089	0.84	+0.3
1,034,679	-				+0.0
1,034,679	-				-0.1
1,034,701	+				-0.0
1,034,701	+				+0.5
1,034,702	-				+0.2
1,034,707	+				+0.9
1,034,707	+				+0.3
1,034,708	-				+0.7
1,034,768	+				+0.7
1,034,768	+				+0.3
1,034,870	+				-0.4
1,034,871	-				-0.2
1,034,871	-				+0.3
1,035,114	+		SMc00090	0.18	-2.5
1,035,114	+		SMc00090	0.18	-0.7
1,035,115	-		SMc00090	0.18	-3.4
1,035,115	-		SMc00090	0.18	-4.8
1,035,115	-		SMc00090	0.18	-3.2
1,035,115	-		SMc00090	0.18	-3.9
1,035,666	+		SMc00090	0.54	-5.0
1,035,666	+		SMc00090	0.54	-3.2
1,035,666	+		SMc00090	0.54	-4.6
1,035,667	-		SMc00090	0.54	-2.9
1,035,693	+		SMc00090	0.56	-1.0
1,035,694	-		SMc00090	0.56	-4.3
1,035,810	+		SMc00090	0.64	-3.2
1,035,811	-		SMc00090	0.64	-5.3
1,035,975	+		SMc00090	0.75	-3.4
1,035,975	+		SMc00090	0.75	-5.6
1,035,976	-		SMc00090	0.75	-2.4
1,036,301	+				-3.5
1,036,301	+				-6.3
1,036,606	+		SMc00091	0.27	-3.7
1,036,632	-		SMc00091	0.30	-1.6
1,036,650	+		SMc00091	0.32	-2.8
1,036,667	+		SMc00091	0.33	-1.2
1,036,668	-		SMc00091	0.34	-4.0
1,036,743	+		SMc00091	0.41	-2.7
1,036,745	+		SMc00091	0.42	-3.3
1,036,746	-		SMc00091	0.42	-1.2
1,036,811	+		SMc00091	0.49	-2.4
1,036,811	+		SMc00091	0.49	-3.7
1,036,811	+		SMc00091	0.49	-2.9
1,036,811	+		SMc00091	0.49	-4.6
1,036,812	-		SMc00091	0.49	-4.1
1,036,927	-		SMc00091	0.61	-4.8
1,036,928	+		SMc00091	0.61	-2.1
1,036,929	-		SMc00091	0.61	-0.6
1,036,929	-		SMc00091	0.61	-6.4
1,036,929	-		SMc00091	0.61	-6.1
1,036,929	-		SMc00091	0.61	+1.4
1,037,010	-		SMc00091	0.69	-1.1
1,037,010	-		SMc00091	0.69	-6.0
1,037,103	-		SMc00091	0.79	-2.1
1,037,103	-		SMc00091	0.79	-3.1
1,037,156	+		SMc00091	0.85	-4.7
1,037,156	+		SMc00091	0.85	-4.9
1,037,292	+				-3.9