Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1500 and SMa1501 are separated by 24 nucleotides SMa1501 and SMa1503 are separated by 30 nucleotides SMa1503 and SMa1505 are separated by 216 nucleotides
SMa1500: SMa1500 - oxidoreductase/oxygenase, at 826,564 to 828,330
SMa1500
SMa1501: SMa1501 - hypothetical protein, at 828,355 to 829,269
SMa1501
SMa1503: SMa1503 - hypothetical protein, at 829,300 to 830,166
SMa1503
SMa1505: SMa1505 - GntR family transcriptional regulator, at 830,383 to 831,168
SMa1505
Position (kb) 829
830
831 Strain fitness (log2 ratio) -1
0
1
2 at 828.380 kb on + strand at 828.413 kb on + strand at 828.582 kb on + strand, within SMa1501 at 828.582 kb on + strand, within SMa1501 at 828.583 kb on - strand, within SMa1501 at 828.583 kb on - strand, within SMa1501 at 828.583 kb on - strand, within SMa1501 at 828.669 kb on - strand, within SMa1501 at 828.684 kb on - strand, within SMa1501 at 828.701 kb on + strand, within SMa1501 at 828.701 kb on + strand, within SMa1501 at 828.701 kb on + strand, within SMa1501 at 828.702 kb on - strand, within SMa1501 at 828.702 kb on - strand, within SMa1501 at 828.702 kb on - strand, within SMa1501 at 828.707 kb on + strand, within SMa1501 at 828.707 kb on + strand, within SMa1501 at 828.707 kb on + strand, within SMa1501 at 828.707 kb on + strand, within SMa1501 at 828.813 kb on - strand, within SMa1501 at 828.813 kb on - strand, within SMa1501 at 828.863 kb on + strand, within SMa1501 at 828.965 kb on + strand, within SMa1501 at 829.018 kb on - strand, within SMa1501 at 829.018 kb on - strand, within SMa1501 at 829.060 kb on - strand, within SMa1501 at 829.060 kb on - strand, within SMa1501 at 829.060 kb on - strand, within SMa1501 at 829.139 kb on + strand, within SMa1501 at 829.139 kb on + strand, within SMa1501 at 829.139 kb on + strand, within SMa1501 at 829.139 kb on + strand, within SMa1501 at 829.139 kb on + strand, within SMa1501 at 829.139 kb on + strand, within SMa1501 at 829.140 kb on - strand, within SMa1501 at 829.140 kb on - strand, within SMa1501 at 829.140 kb on - strand, within SMa1501 at 829.292 kb on + strand at 829.293 kb on - strand at 829.359 kb on - strand at 829.514 kb on + strand, within SMa1503 at 829.576 kb on + strand, within SMa1503 at 829.576 kb on + strand, within SMa1503 at 829.593 kb on + strand, within SMa1503 at 829.613 kb on + strand, within SMa1503 at 829.613 kb on + strand, within SMa1503 at 829.646 kb on + strand, within SMa1503 at 829.646 kb on + strand, within SMa1503 at 829.647 kb on - strand, within SMa1503 at 829.652 kb on + strand, within SMa1503 at 829.652 kb on + strand, within SMa1503 at 829.653 kb on - strand, within SMa1503 at 829.653 kb on - strand, within SMa1503 at 829.751 kb on + strand, within SMa1503 at 829.826 kb on - strand, within SMa1503 at 829.869 kb on + strand, within SMa1503 at 829.870 kb on - strand, within SMa1503 at 829.870 kb on - strand, within SMa1503 at 829.889 kb on + strand, within SMa1503 at 829.890 kb on - strand, within SMa1503 at 830.628 kb on - strand, within SMa1505 at 830.629 kb on + strand, within SMa1505 at 830.630 kb on - strand, within SMa1505 at 830.630 kb on - strand, within SMa1505 at 830.790 kb on + strand, within SMa1505 at 830.790 kb on + strand, within SMa1505 at 830.790 kb on + strand, within SMa1505 at 830.897 kb on - strand, within SMa1505 at 831.000 kb on - strand, within SMa1505 at 831.007 kb on + strand, within SMa1505 at 831.007 kb on + strand, within SMa1505 at 831.007 kb on + strand, within SMa1505 at 831.007 kb on + strand, within SMa1505 at 831.008 kb on - strand, within SMa1505 at 831.009 kb on + strand, within SMa1505 at 831.009 kb on + strand, within SMa1505 at 831.009 kb on + strand, within SMa1505 at 831.010 kb on - strand, within SMa1505 at 831.010 kb on - strand, within SMa1505 at 831.010 kb on - strand, within SMa1505 at 831.010 kb on - strand, within SMa1505
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 828,380 + +1.3 828,413 + -1.2 828,582 + SMa1501 0.25 +0.2 828,582 + SMa1501 0.25 -0.9 828,583 - SMa1501 0.25 -0.9 828,583 - SMa1501 0.25 +1.8 828,583 - SMa1501 0.25 -0.3 828,669 - SMa1501 0.34 -1.0 828,684 - SMa1501 0.36 -1.5 828,701 + SMa1501 0.38 -0.4 828,701 + SMa1501 0.38 +0.9 828,701 + SMa1501 0.38 +1.4 828,702 - SMa1501 0.38 +0.3 828,702 - SMa1501 0.38 +0.2 828,702 - SMa1501 0.38 -0.2 828,707 + SMa1501 0.38 -0.2 828,707 + SMa1501 0.38 +0.1 828,707 + SMa1501 0.38 +0.1 828,707 + SMa1501 0.38 -0.4 828,813 - SMa1501 0.50 -0.7 828,813 - SMa1501 0.50 -0.6 828,863 + SMa1501 0.56 +0.1 828,965 + SMa1501 0.67 -0.2 829,018 - SMa1501 0.72 -0.7 829,018 - SMa1501 0.72 +0.1 829,060 - SMa1501 0.77 -0.9 829,060 - SMa1501 0.77 -0.6 829,060 - SMa1501 0.77 -0.4 829,139 + SMa1501 0.86 +0.0 829,139 + SMa1501 0.86 -0.3 829,139 + SMa1501 0.86 -0.3 829,139 + SMa1501 0.86 -0.7 829,139 + SMa1501 0.86 +0.3 829,139 + SMa1501 0.86 -0.1 829,140 - SMa1501 0.86 -0.1 829,140 - SMa1501 0.86 -0.6 829,140 - SMa1501 0.86 -0.3 829,292 + -1.5 829,293 - +0.9 829,359 - -0.4 829,514 + SMa1503 0.25 +1.1 829,576 + SMa1503 0.32 -0.2 829,576 + SMa1503 0.32 +0.4 829,593 + SMa1503 0.34 +0.5 829,613 + SMa1503 0.36 -0.4 829,613 + SMa1503 0.36 -0.5 829,646 + SMa1503 0.40 +0.4 829,646 + SMa1503 0.40 +0.0 829,647 - SMa1503 0.40 -0.3 829,652 + SMa1503 0.41 -0.3 829,652 + SMa1503 0.41 -0.9 829,653 - SMa1503 0.41 +0.5 829,653 - SMa1503 0.41 -0.2 829,751 + SMa1503 0.52 -0.3 829,826 - SMa1503 0.61 +0.1 829,869 + SMa1503 0.66 +0.1 829,870 - SMa1503 0.66 -0.0 829,870 - SMa1503 0.66 +0.7 829,889 + SMa1503 0.68 -0.2 829,890 - SMa1503 0.68 -0.0 830,628 - SMa1505 0.31 -0.1 830,629 + SMa1505 0.31 -0.4 830,630 - SMa1505 0.31 -0.1 830,630 - SMa1505 0.31 +1.6 830,790 + SMa1505 0.52 -0.4 830,790 + SMa1505 0.52 +0.5 830,790 + SMa1505 0.52 -0.1 830,897 - SMa1505 0.65 +0.1 831,000 - SMa1505 0.78 -0.1 831,007 + SMa1505 0.79 -1.2 831,007 + SMa1505 0.79 +0.2 831,007 + SMa1505 0.79 -0.4 831,007 + SMa1505 0.79 +0.1 831,008 - SMa1505 0.80 +1.1 831,009 + SMa1505 0.80 -1.4 831,009 + SMa1505 0.80 +0.5 831,009 + SMa1505 0.80 +0.7 831,010 - SMa1505 0.80 +0.4 831,010 - SMa1505 0.80 -1.1 831,010 - SMa1505 0.80 -0.1 831,010 - SMa1505 0.80 -0.5
Or see this region's nucleotide sequence