Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0757 and SMa0758 are separated by 920 nucleotides SMa0758 and SMa0759 are separated by 230 nucleotides SMa0759 and SMa0760 are separated by 48 nucleotides
SMa0757: SMa0757 - NodD2 nod box-dependent transcription activator, at 409,254 to 410,186
SMa0757
SMa0758: SMa0758 - hypothetical protein, at 411,107 to 411,682
SMa0758
SMa0759: SMa0759 - hypothetical protein, at 411,913 to 412,314
SMa0759
SMa0760: SMa0760 - FixT2 anti-kinase, at 412,363 to 412,710
SMa0760
Position (kb) 411
412 Strain fitness (log2 ratio) -2
-1
0
1
2 at 410.132 kb on - strand at 410.179 kb on + strand at 410.410 kb on + strand at 410.410 kb on + strand at 410.411 kb on - strand at 410.411 kb on - strand at 410.557 kb on + strand at 410.557 kb on + strand at 410.558 kb on - strand at 410.558 kb on - strand at 410.569 kb on + strand at 410.582 kb on + strand at 410.582 kb on + strand at 410.738 kb on + strand at 410.746 kb on + strand at 410.746 kb on + strand at 410.746 kb on + strand at 410.761 kb on + strand at 410.778 kb on + strand at 410.824 kb on - strand at 410.826 kb on - strand at 410.963 kb on + strand at 411.171 kb on + strand, within SMa0758 at 411.171 kb on + strand, within SMa0758 at 411.180 kb on + strand, within SMa0758 at 411.180 kb on + strand, within SMa0758 at 411.823 kb on + strand at 411.823 kb on + strand at 411.823 kb on + strand at 411.845 kb on + strand at 411.859 kb on + strand at 411.859 kb on + strand at 411.860 kb on - strand at 411.908 kb on + strand at 411.909 kb on - strand at 411.909 kb on - strand at 411.909 kb on - strand at 411.972 kb on + strand, within SMa0759 at 412.059 kb on + strand, within SMa0759 at 412.059 kb on + strand, within SMa0759 at 412.060 kb on - strand, within SMa0759 at 412.138 kb on + strand, within SMa0759 at 412.448 kb on - strand, within SMa0760 at 412.633 kb on + strand, within SMa0760
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 410,132 - +0.6 410,179 + -0.2 410,410 + +1.9 410,410 + -0.3 410,411 - +1.3 410,411 - +0.5 410,557 + -0.4 410,557 + +0.0 410,558 - +0.0 410,558 - -0.6 410,569 + +0.1 410,582 + +0.2 410,582 + -0.2 410,738 + -0.3 410,746 + -0.1 410,746 + +1.1 410,746 + -0.7 410,761 + +0.0 410,778 + -0.1 410,824 - +0.1 410,826 - +0.6 410,963 + -0.2 411,171 + SMa0758 0.11 -1.0 411,171 + SMa0758 0.11 +0.8 411,180 + SMa0758 0.13 -1.1 411,180 + SMa0758 0.13 -1.9 411,823 + -0.6 411,823 + -0.3 411,823 + +0.5 411,845 + +1.6 411,859 + +0.2 411,859 + -0.2 411,860 - -0.5 411,908 + -0.1 411,909 - +0.1 411,909 - -0.2 411,909 - -0.9 411,972 + SMa0759 0.15 -0.0 412,059 + SMa0759 0.36 +0.2 412,059 + SMa0759 0.36 -0.1 412,060 - SMa0759 0.37 +0.6 412,138 + SMa0759 0.56 -0.4 412,448 - SMa0760 0.24 -0.4 412,633 + SMa0760 0.78 +0.2
Or see this region's nucleotide sequence