Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0713 and SMa0714 overlap by 4 nucleotides SMa0714 and SMa0715 are separated by 1 nucleotides SMa0715 and SMa0717 overlap by 22 nucleotides
SMa0713: SMa0713 - ABC transporter ATP-binding protein, at 387,217 to 387,810
SMa0713
SMa0714: SMa0714 - ABC transporter ATP-binding protein, at 387,807 to 388,304
SMa0714
SMa0715: SMa0715 - Nucleoside-diphosphate-sugar epimerase, at 388,306 to 389,286
SMa0715
SMa0717: SMa0717 - hypothetical protein, at 389,265 to 390,974
SMa0717
Position (kb) 388
389
390 Strain fitness (log2 ratio) -1
0
1 at 387.314 kb on + strand, within SMa0713 at 387.466 kb on + strand, within SMa0713 at 387.466 kb on + strand, within SMa0713 at 387.466 kb on + strand, within SMa0713 at 387.466 kb on + strand, within SMa0713 at 387.467 kb on - strand, within SMa0713 at 387.467 kb on - strand, within SMa0713 at 387.467 kb on - strand, within SMa0713 at 387.467 kb on - strand, within SMa0713 at 387.467 kb on - strand, within SMa0713 at 387.467 kb on - strand, within SMa0713 at 387.501 kb on + strand, within SMa0713 at 387.657 kb on + strand, within SMa0713 at 387.728 kb on + strand, within SMa0713 at 387.781 kb on - strand at 387.872 kb on + strand, within SMa0714 at 387.873 kb on - strand, within SMa0714 at 387.873 kb on - strand, within SMa0714 at 388.120 kb on - strand, within SMa0714 at 388.150 kb on - strand, within SMa0714 at 388.472 kb on + strand, within SMa0715 at 388.472 kb on + strand, within SMa0715 at 388.781 kb on + strand, within SMa0715 at 388.782 kb on - strand, within SMa0715 at 388.992 kb on + strand, within SMa0715 at 388.992 kb on + strand, within SMa0715 at 388.993 kb on - strand, within SMa0715 at 388.993 kb on - strand, within SMa0715 at 388.995 kb on + strand, within SMa0715 at 388.996 kb on - strand, within SMa0715 at 389.037 kb on + strand, within SMa0715 at 389.037 kb on + strand, within SMa0715 at 389.038 kb on - strand, within SMa0715 at 389.061 kb on + strand, within SMa0715 at 389.115 kb on - strand, within SMa0715 at 389.273 kb on + strand at 389.285 kb on - strand at 389.359 kb on + strand at 389.359 kb on + strand at 389.360 kb on - strand at 389.494 kb on - strand, within SMa0717 at 389.787 kb on + strand, within SMa0717 at 389.787 kb on + strand, within SMa0717 at 389.787 kb on + strand, within SMa0717 at 389.787 kb on + strand, within SMa0717 at 389.799 kb on - strand, within SMa0717 at 390.236 kb on + strand, within SMa0717 at 390.251 kb on + strand, within SMa0717 at 390.251 kb on + strand, within SMa0717 at 390.251 kb on + strand, within SMa0717 at 390.252 kb on - strand, within SMa0717
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 387,314 + SMa0713 0.16 +0.8 387,466 + SMa0713 0.42 +0.3 387,466 + SMa0713 0.42 -0.5 387,466 + SMa0713 0.42 -1.2 387,466 + SMa0713 0.42 +0.4 387,467 - SMa0713 0.42 +0.0 387,467 - SMa0713 0.42 -0.3 387,467 - SMa0713 0.42 -1.0 387,467 - SMa0713 0.42 +0.3 387,467 - SMa0713 0.42 -0.8 387,467 - SMa0713 0.42 -0.6 387,501 + SMa0713 0.48 +0.2 387,657 + SMa0713 0.74 -0.1 387,728 + SMa0713 0.86 -0.4 387,781 - +0.5 387,872 + SMa0714 0.13 -0.9 387,873 - SMa0714 0.13 +0.5 387,873 - SMa0714 0.13 +0.3 388,120 - SMa0714 0.63 +1.4 388,150 - SMa0714 0.69 -1.1 388,472 + SMa0715 0.17 -0.0 388,472 + SMa0715 0.17 +0.8 388,781 + SMa0715 0.48 -0.3 388,782 - SMa0715 0.49 -0.3 388,992 + SMa0715 0.70 -0.4 388,992 + SMa0715 0.70 +1.6 388,993 - SMa0715 0.70 -0.5 388,993 - SMa0715 0.70 -0.1 388,995 + SMa0715 0.70 -0.5 388,996 - SMa0715 0.70 -0.0 389,037 + SMa0715 0.75 +0.4 389,037 + SMa0715 0.75 -0.8 389,038 - SMa0715 0.75 -0.6 389,061 + SMa0715 0.77 -0.4 389,115 - SMa0715 0.82 -1.1 389,273 + +0.4 389,285 - -0.3 389,359 + -0.2 389,359 + +1.4 389,360 - -0.6 389,494 - SMa0717 0.13 -0.8 389,787 + SMa0717 0.31 -0.5 389,787 + SMa0717 0.31 +0.3 389,787 + SMa0717 0.31 +0.9 389,787 + SMa0717 0.31 -0.3 389,799 - SMa0717 0.31 -0.6 390,236 + SMa0717 0.57 -0.1 390,251 + SMa0717 0.58 -0.6 390,251 + SMa0717 0.58 +0.3 390,251 + SMa0717 0.58 -1.2 390,252 - SMa0717 0.58 -0.1
Or see this region's nucleotide sequence