Strain Fitness in Sinorhizobium meliloti 1021 around SMa0695

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0693 and SMa0695 are separated by 35 nucleotidesSMa0695 and SMa0697 are separated by 2 nucleotides SMa0693: SMa0693 - arginine deiminase, at 375,708 to 376,937 SMa0693 SMa0695: SMa0695 - ornithine carbamoyltransferase, at 376,973 to 377,977 SMa0695 SMa0697: SMa0697 - carbamate kinase, at 377,980 to 378,954 SMa0697 Position (kb) 376 377 378Strain fitness (log2 ratio) -2 -1 0 1 2at 376.115 kb on + strand, within SMa0693at 376.115 kb on + strand, within SMa0693at 376.116 kb on - strand, within SMa0693at 376.272 kb on + strand, within SMa0693at 376.272 kb on + strand, within SMa0693at 376.422 kb on + strand, within SMa0693at 376.423 kb on - strand, within SMa0693at 376.423 kb on - strand, within SMa0693at 376.579 kb on + strand, within SMa0693at 376.579 kb on + strand, within SMa0693at 376.579 kb on + strand, within SMa0693at 376.596 kb on + strand, within SMa0693at 376.596 kb on + strandat 376.597 kb on - strand, within SMa0693at 376.704 kb on - strand, within SMa0693at 376.725 kb on + strand, within SMa0693at 376.725 kb on + strand, within SMa0693at 376.726 kb on - strand, within SMa0693at 376.812 kb on + strand, within SMa0693at 376.813 kb on - strand, within SMa0693at 376.813 kb on - strand, within SMa0693at 376.814 kb on + strand, within SMa0693at 376.814 kb on + strand, within SMa0693at 376.814 kb on + strand, within SMa0693at 376.815 kb on - strandat 377.018 kb on + strandat 377.019 kb on - strandat 377.040 kb on - strandat 377.046 kb on + strandat 377.149 kb on + strand, within SMa0695at 377.150 kb on - strand, within SMa0695at 377.198 kb on - strand, within SMa0695at 377.202 kb on - strand, within SMa0695at 377.351 kb on + strand, within SMa0695at 377.351 kb on + strand, within SMa0695at 377.352 kb on - strand, within SMa0695at 377.373 kb on - strand, within SMa0695at 377.373 kb on - strand, within SMa0695at 377.408 kb on - strand, within SMa0695at 377.408 kb on - strand, within SMa0695at 377.420 kb on - strand, within SMa0695at 377.448 kb on - strand, within SMa0695at 377.453 kb on + strand, within SMa0695at 377.454 kb on - strand, within SMa0695at 377.455 kb on + strand, within SMa0695at 377.455 kb on + strand, within SMa0695at 377.508 kb on + strand, within SMa0695at 377.529 kb on + strand, within SMa0695at 377.587 kb on + strand, within SMa0695at 377.587 kb on + strand, within SMa0695at 377.587 kb on + strand, within SMa0695at 377.725 kb on + strand, within SMa0695at 377.725 kb on + strand, within SMa0695at 377.812 kb on + strand, within SMa0695at 377.908 kb on - strandat 377.908 kb on - strandat 377.908 kb on - strandat 377.938 kb on + strandat 377.938 kb on + strandat 377.939 kb on - strandat 377.979 kb on + strandat 377.999 kb on + strandat 378.000 kb on - strandat 378.117 kb on + strand, within SMa0697at 378.146 kb on + strand, within SMa0697at 378.150 kb on - strand, within SMa0697at 378.169 kb on + strand, within SMa0697at 378.169 kb on + strand, within SMa0697at 378.169 kb on + strand, within SMa0697at 378.170 kb on - strand, within SMa0697at 378.198 kb on + strand, within SMa0697at 378.200 kb on + strand, within SMa0697at 378.200 kb on + strand, within SMa0697at 378.200 kb on + strand, within SMa0697at 378.200 kb on + strandat 378.426 kb on + strand, within SMa0697at 378.550 kb on + strand, within SMa0697at 378.550 kb on + strand, within SMa0697at 378.551 kb on - strand, within SMa0697at 378.653 kb on + strand, within SMa0697at 378.678 kb on - strand, within SMa0697at 378.766 kb on - strand, within SMa0697at 378.827 kb on + strand, within SMa0697at 378.827 kb on + strand, within SMa0697at 378.881 kb on + strandat 378.881 kb on + strandat 378.881 kb on + strandat 378.881 kb on + strandat 378.882 kb on - strandat 378.882 kb on - strandat 378.882 kb on - strandat 378.882 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
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376,115 + SMa0693 0.33 -0.0
376,115 + SMa0693 0.33 -0.5
376,116 - SMa0693 0.33 -0.9
376,272 + SMa0693 0.46 -0.1
376,272 + SMa0693 0.46 -0.0
376,422 + SMa0693 0.58 -0.3
376,423 - SMa0693 0.58 -0.2
376,423 - SMa0693 0.58 -0.4
376,579 + SMa0693 0.71 -0.2
376,579 + SMa0693 0.71 +0.6
376,579 + SMa0693 0.71 +0.0
376,596 + SMa0693 0.72 -0.1
376,596 + -0.8
376,597 - SMa0693 0.72 -0.5
376,704 - SMa0693 0.81 +0.5
376,725 + SMa0693 0.83 +0.9
376,725 + SMa0693 0.83 -0.2
376,726 - SMa0693 0.83 -0.1
376,812 + SMa0693 0.90 +0.6
376,813 - SMa0693 0.90 -0.3
376,813 - SMa0693 0.90 -1.3
376,814 + SMa0693 0.90 +1.7
376,814 + SMa0693 0.90 -0.7
376,814 + SMa0693 0.90 +0.2
376,815 - +0.5
377,018 + -0.1
377,019 - +0.9
377,040 - -0.2
377,046 + -0.4
377,149 + SMa0695 0.18 +0.2
377,150 - SMa0695 0.18 -0.3
377,198 - SMa0695 0.22 +0.7
377,202 - SMa0695 0.23 +1.0
377,351 + SMa0695 0.38 +0.0
377,351 + SMa0695 0.38 -1.3
377,352 - SMa0695 0.38 -0.8
377,373 - SMa0695 0.40 +0.5
377,373 - SMa0695 0.40 +1.0
377,408 - SMa0695 0.43 +0.3
377,408 - SMa0695 0.43 +0.3
377,420 - SMa0695 0.44 +0.6
377,448 - SMa0695 0.47 -0.5
377,453 + SMa0695 0.48 +0.8
377,454 - SMa0695 0.48 +0.3
377,455 + SMa0695 0.48 +0.1
377,455 + SMa0695 0.48 +0.4
377,508 + SMa0695 0.53 -1.4
377,529 + SMa0695 0.55 +0.4
377,587 + SMa0695 0.61 -1.4
377,587 + SMa0695 0.61 +1.2
377,587 + SMa0695 0.61 +0.0
377,725 + SMa0695 0.75 -2.1
377,725 + SMa0695 0.75 -2.0
377,812 + SMa0695 0.83 +0.4
377,908 - +0.3
377,908 - -0.7
377,908 - +0.1
377,938 + -0.5
377,938 + -0.0
377,939 - -0.4
377,979 + +0.1
377,999 + -0.6
378,000 - +0.2
378,117 + SMa0697 0.14 -0.9
378,146 + SMa0697 0.17 +0.1
378,150 - SMa0697 0.17 -1.4
378,169 + SMa0697 0.19 -0.2
378,169 + SMa0697 0.19 -1.0
378,169 + SMa0697 0.19 +2.0
378,170 - SMa0697 0.19 -0.2
378,198 + SMa0697 0.22 +0.2
378,200 + SMa0697 0.23 -0.8
378,200 + SMa0697 0.23 -0.8
378,200 + SMa0697 0.23 -0.0
378,200 + +2.2
378,426 + SMa0697 0.46 -0.4
378,550 + SMa0697 0.58 -1.5
378,550 + SMa0697 0.58 -0.3
378,551 - SMa0697 0.59 -1.0
378,653 + SMa0697 0.69 +0.7
378,678 - SMa0697 0.72 +0.6
378,766 - SMa0697 0.81 +0.6
378,827 + SMa0697 0.87 -0.6
378,827 + SMa0697 0.87 +1.8
378,881 + +0.1
378,881 + -0.3
378,881 + +0.0
378,881 + +0.6
378,882 - +0.1
378,882 - -0.0
378,882 - -0.6
378,882 - +0.5

Or see this region's nucleotide sequence