Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0513 and SMa0514 are separated by 1 nucleotides SMa0514 and SMa0516 overlap by 4 nucleotides SMa0516 and SMa0518 overlap by 4 nucleotides SMa0518 and SMa0520 are separated by 358 nucleotides
SMa0513: SMa0513 - gluconate 5-dehydrogenase, at 277,846 to 278,601
SMa0513
SMa0514: SMa0514 - gluconate kinase, at 278,603 to 279,121
SMa0514
SMa0516: SMa0516 - hypothetical protein, at 279,118 to 280,005
SMa0516
SMa0518: SMa0518 - hypothetical protein, at 280,002 to 280,334
SMa0518
SMa0520: SMa0520 - RpiR family transcriptional regulator, at 280,693 to 281,535
SMa0520
Position (kb) 279
280
281 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 278.308 kb on + strand, within SMa0513 at 278.309 kb on - strand, within SMa0513 at 278.309 kb on - strand, within SMa0513 at 278.569 kb on + strand at 278.570 kb on - strand at 278.570 kb on - strand at 278.705 kb on + strand, within SMa0514 at 278.705 kb on + strand, within SMa0514 at 278.706 kb on - strand, within SMa0514 at 278.706 kb on - strand, within SMa0514 at 279.298 kb on + strand, within SMa0516 at 279.299 kb on - strand, within SMa0516 at 279.299 kb on - strand, within SMa0516 at 279.299 kb on - strand, within SMa0516 at 279.305 kb on + strand, within SMa0516 at 279.306 kb on - strand, within SMa0516 at 279.592 kb on + strand, within SMa0516 at 279.592 kb on + strand, within SMa0516 at 279.600 kb on + strand, within SMa0516 at 279.647 kb on + strand, within SMa0516 at 279.648 kb on - strand, within SMa0516 at 279.648 kb on - strand, within SMa0516 at 279.648 kb on - strand, within SMa0516 at 279.698 kb on + strand, within SMa0516 at 279.775 kb on + strand, within SMa0516 at 279.776 kb on - strand, within SMa0516 at 279.776 kb on - strand, within SMa0516 at 279.776 kb on - strand, within SMa0516 at 279.987 kb on + strand at 280.168 kb on + strand, within SMa0518 at 280.191 kb on + strand, within SMa0518 at 280.191 kb on + strand, within SMa0518 at 280.191 kb on + strand, within SMa0518 at 280.192 kb on - strand, within SMa0518 at 280.373 kb on + strand at 280.487 kb on + strand at 280.487 kb on + strand at 280.487 kb on + strand at 280.487 kb on + strand at 280.487 kb on + strand at 280.487 kb on + strand at 280.488 kb on - strand at 280.488 kb on - strand at 280.488 kb on - strand at 280.488 kb on - strand at 280.533 kb on + strand at 280.560 kb on + strand at 280.667 kb on - strand at 280.667 kb on - strand at 280.669 kb on - strand at 280.719 kb on + strand at 280.719 kb on + strand at 280.729 kb on - strand at 280.879 kb on + strand, within SMa0520 at 280.880 kb on - strand, within SMa0520 at 280.880 kb on - strand, within SMa0520 at 280.950 kb on + strand, within SMa0520 at 280.951 kb on - strand, within SMa0520
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 278,308 + SMa0513 0.61 -0.0 278,309 - SMa0513 0.61 -0.0 278,309 - SMa0513 0.61 -0.3 278,569 + -1.4 278,570 - +0.6 278,570 - +0.2 278,705 + SMa0514 0.20 -0.6 278,705 + SMa0514 0.20 -1.1 278,706 - SMa0514 0.20 -0.2 278,706 - SMa0514 0.20 -0.1 279,298 + SMa0516 0.20 -0.8 279,299 - SMa0516 0.20 -3.1 279,299 - SMa0516 0.20 -1.1 279,299 - SMa0516 0.20 -0.2 279,305 + SMa0516 0.21 -0.6 279,306 - SMa0516 0.21 -0.2 279,592 + SMa0516 0.53 +0.3 279,592 + SMa0516 0.53 +0.4 279,600 + SMa0516 0.54 -0.5 279,647 + SMa0516 0.60 -0.3 279,648 - SMa0516 0.60 +0.2 279,648 - SMa0516 0.60 -0.4 279,648 - SMa0516 0.60 -0.2 279,698 + SMa0516 0.65 -0.7 279,775 + SMa0516 0.74 -0.0 279,776 - SMa0516 0.74 -0.3 279,776 - SMa0516 0.74 -0.1 279,776 - SMa0516 0.74 -0.1 279,987 + +0.5 280,168 + SMa0518 0.50 +0.9 280,191 + SMa0518 0.57 +0.2 280,191 + SMa0518 0.57 -0.2 280,191 + SMa0518 0.57 -0.1 280,192 - SMa0518 0.57 -0.1 280,373 + -0.2 280,487 + -0.8 280,487 + -0.1 280,487 + +0.7 280,487 + -0.2 280,487 + +0.6 280,487 + -0.6 280,488 - -0.1 280,488 - -1.8 280,488 - -0.7 280,488 - +0.1 280,533 + -0.7 280,560 + -0.2 280,667 - +1.3 280,667 - +0.9 280,669 - -0.2 280,719 + +2.0 280,719 + -0.1 280,729 - +0.0 280,879 + SMa0520 0.22 +0.5 280,880 - SMa0520 0.22 -1.3 280,880 - SMa0520 0.22 +1.1 280,950 + SMa0520 0.30 -0.2 280,951 - SMa0520 0.31 -0.3
Or see this region's nucleotide sequence