Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0448 and SMa0450 are separated by 549 nucleotides
SMa0448: SMa0448 - hypothetical protein, at 240,025 to 240,435
SMa0448
SMa0450: SMa0450 - hypothetical protein, at 240,985 to 241,272
SMa0450
Position (kb) 240
241
242 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 240.056 kb on + strand at 240.057 kb on - strand at 240.057 kb on - strand at 240.080 kb on + strand, within SMa0448 at 240.081 kb on - strand, within SMa0448 at 240.081 kb on - strand, within SMa0448 at 240.172 kb on + strand, within SMa0448 at 240.407 kb on - strand at 240.458 kb on + strand at 240.459 kb on - strand at 240.525 kb on + strand at 240.567 kb on - strand at 240.567 kb on - strand at 240.659 kb on + strand at 240.660 kb on - strand at 240.660 kb on - strand at 240.728 kb on - strand at 240.778 kb on - strand at 240.867 kb on + strand at 241.054 kb on + strand, within SMa0450 at 241.058 kb on + strand, within SMa0450 at 241.059 kb on - strand, within SMa0450 at 241.270 kb on + strand at 241.325 kb on - strand at 241.325 kb on - strand at 241.395 kb on + strand at 241.395 kb on + strand at 241.420 kb on + strand at 241.420 kb on + strand at 241.420 kb on + strand at 241.422 kb on + strand at 241.423 kb on - strand at 241.423 kb on - strand at 241.423 kb on - strand at 241.423 kb on - strand at 241.503 kb on + strand at 241.503 kb on + strand at 241.504 kb on - strand at 241.546 kb on - strand at 241.548 kb on + strand at 241.548 kb on + strand at 241.549 kb on - strand at 241.549 kb on - strand at 241.549 kb on - strand at 241.642 kb on - strand at 241.744 kb on + strand at 241.910 kb on + strand at 242.109 kb on - strand at 242.111 kb on - strand at 242.175 kb on + strand at 242.175 kb on + strand at 242.176 kb on - strand at 242.182 kb on + strand at 242.271 kb on - strand at 242.271 kb on - strand at 242.271 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 240,056 + +0.2 240,057 - +0.5 240,057 - -0.1 240,080 + SMa0448 0.13 -0.6 240,081 - SMa0448 0.14 +1.2 240,081 - SMa0448 0.14 +0.2 240,172 + SMa0448 0.36 +0.2 240,407 - +0.7 240,458 + +0.2 240,459 - -0.4 240,525 + -0.3 240,567 - +0.8 240,567 - +0.4 240,659 + +0.2 240,660 - -1.1 240,660 - -0.4 240,728 - -0.4 240,778 - -3.6 240,867 + +0.4 241,054 + SMa0450 0.24 +0.6 241,058 + SMa0450 0.25 +0.5 241,059 - SMa0450 0.26 -0.9 241,270 + +1.6 241,325 - +0.0 241,325 - +0.5 241,395 + -0.4 241,395 + -0.4 241,420 + +0.5 241,420 + -0.2 241,420 + +0.2 241,422 + +0.2 241,423 - -0.2 241,423 - -0.6 241,423 - +0.3 241,423 - -1.0 241,503 + +0.3 241,503 + +0.5 241,504 - +0.0 241,546 - -0.4 241,548 + -0.7 241,548 + -0.2 241,549 - +0.5 241,549 - -1.4 241,549 - -0.6 241,642 - +0.1 241,744 + +0.8 241,910 + +0.1 242,109 - -0.0 242,111 - -0.3 242,175 + -0.9 242,175 + -0.1 242,176 - +0.7 242,182 + -0.7 242,271 - -0.1 242,271 - -0.6 242,271 - -0.4
Or see this region's nucleotide sequence