Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0300 and SMa0301 overlap by 4 nucleotides SMa0301 and SMa0302 are separated by 69 nucleotides SMa0302 and SMa0303 are separated by 107 nucleotides
SMa0300: SMa0300 - ABC transporter permease, at 165,742 to 166,695
SMa0300
SMa0301: SMa0301 - hypothetical protein, at 166,692 to 167,360
SMa0301
SMa0302: SMa0302 - ABC transporter substrate-binding protein, at 167,430 to 168,956
SMa0302
SMa0303: SMa0303 - LysR family transcriptional regulator, at 169,064 to 169,942
SMa0303
Position (kb) 167
168
169 Strain fitness (log2 ratio) -2
-1
0
1
2 at 166.496 kb on + strand, within SMa0300 at 166.685 kb on - strand at 166.685 kb on - strand at 166.685 kb on - strand at 166.685 kb on - strand at 166.789 kb on + strand, within SMa0301 at 166.789 kb on + strand, within SMa0301 at 166.789 kb on + strand, within SMa0301 at 166.790 kb on - strand, within SMa0301 at 166.790 kb on - strand, within SMa0301 at 166.790 kb on - strand, within SMa0301 at 166.925 kb on - strand, within SMa0301 at 166.927 kb on + strand, within SMa0301 at 167.000 kb on + strand, within SMa0301 at 167.001 kb on - strand, within SMa0301 at 167.034 kb on - strand, within SMa0301 at 167.056 kb on + strand, within SMa0301 at 167.057 kb on - strand, within SMa0301 at 167.101 kb on + strand, within SMa0301 at 167.101 kb on + strand, within SMa0301 at 167.102 kb on - strand, within SMa0301 at 167.366 kb on + strand at 167.366 kb on + strand at 167.367 kb on - strand at 167.456 kb on - strand at 167.456 kb on - strand at 167.488 kb on + strand at 167.546 kb on + strand at 167.734 kb on + strand, within SMa0302 at 167.734 kb on + strand, within SMa0302 at 167.735 kb on - strand, within SMa0302 at 167.776 kb on + strand, within SMa0302 at 167.839 kb on + strand, within SMa0302 at 167.884 kb on + strand, within SMa0302 at 167.884 kb on + strand, within SMa0302 at 168.123 kb on + strand, within SMa0302 at 168.124 kb on - strand, within SMa0302 at 168.133 kb on + strand, within SMa0302 at 168.134 kb on - strand, within SMa0302 at 168.263 kb on + strand, within SMa0302 at 168.303 kb on - strand, within SMa0302 at 168.362 kb on + strand, within SMa0302 at 168.363 kb on - strand, within SMa0302 at 168.363 kb on - strand, within SMa0302 at 168.399 kb on - strand, within SMa0302 at 168.451 kb on + strand, within SMa0302 at 168.451 kb on + strand, within SMa0302 at 168.451 kb on + strand, within SMa0302 at 168.611 kb on - strand, within SMa0302 at 168.766 kb on + strand, within SMa0302 at 168.778 kb on - strand, within SMa0302 at 168.779 kb on + strand, within SMa0302 at 168.780 kb on - strand, within SMa0302 at 168.785 kb on - strand, within SMa0302 at 168.848 kb on - strand at 169.032 kb on + strand at 169.032 kb on + strand at 169.032 kb on + strand at 169.272 kb on - strand, within SMa0303 at 169.272 kb on - strand, within SMa0303 at 169.368 kb on - strand, within SMa0303 at 169.368 kb on - strand, within SMa0303 at 169.368 kb on - strand, within SMa0303 at 169.396 kb on - strand, within SMa0303 at 169.506 kb on - strand, within SMa0303 at 169.506 kb on - strand, within SMa0303 at 169.506 kb on - strand, within SMa0303 at 169.507 kb on + strand, within SMa0303 at 169.507 kb on + strand, within SMa0303 at 169.508 kb on - strand, within SMa0303 at 169.508 kb on - strand, within SMa0303 at 169.538 kb on + strand, within SMa0303 at 169.539 kb on - strand, within SMa0303 at 169.726 kb on + strand, within SMa0303 at 169.805 kb on - strand, within SMa0303 at 169.805 kb on - strand, within SMa0303 at 169.866 kb on - strand at 169.866 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 166,496 + SMa0300 0.79 +0.8 166,685 - +0.1 166,685 - +0.8 166,685 - +0.7 166,685 - +0.2 166,789 + SMa0301 0.14 +0.1 166,789 + SMa0301 0.14 +0.1 166,789 + SMa0301 0.14 +1.2 166,790 - SMa0301 0.15 +1.4 166,790 - SMa0301 0.15 -0.2 166,790 - SMa0301 0.15 +0.8 166,925 - SMa0301 0.35 +1.2 166,927 + SMa0301 0.35 -0.8 167,000 + SMa0301 0.46 -0.4 167,001 - SMa0301 0.46 -2.4 167,034 - SMa0301 0.51 -0.7 167,056 + SMa0301 0.54 -0.2 167,057 - SMa0301 0.55 -1.4 167,101 + SMa0301 0.61 -0.5 167,101 + SMa0301 0.61 +0.2 167,102 - SMa0301 0.61 -0.6 167,366 + -0.3 167,366 + -0.1 167,367 - +0.3 167,456 - +0.7 167,456 - +0.1 167,488 + -0.4 167,546 + -2.3 167,734 + SMa0302 0.20 +0.2 167,734 + SMa0302 0.20 +0.5 167,735 - SMa0302 0.20 -0.1 167,776 + SMa0302 0.23 -0.3 167,839 + SMa0302 0.27 +0.1 167,884 + SMa0302 0.30 +1.1 167,884 + SMa0302 0.30 +0.6 168,123 + SMa0302 0.45 -0.1 168,124 - SMa0302 0.45 -0.5 168,133 + SMa0302 0.46 -1.7 168,134 - SMa0302 0.46 -1.0 168,263 + SMa0302 0.55 -0.2 168,303 - SMa0302 0.57 -2.6 168,362 + SMa0302 0.61 -0.7 168,363 - SMa0302 0.61 -1.4 168,363 - SMa0302 0.61 +1.0 168,399 - SMa0302 0.63 -0.1 168,451 + SMa0302 0.67 -0.6 168,451 + SMa0302 0.67 -0.1 168,451 + SMa0302 0.67 -0.9 168,611 - SMa0302 0.77 -0.7 168,766 + SMa0302 0.87 -0.0 168,778 - SMa0302 0.88 -0.3 168,779 + SMa0302 0.88 -1.3 168,780 - SMa0302 0.88 -0.4 168,785 - SMa0302 0.89 -0.2 168,848 - -0.4 169,032 + -0.3 169,032 + -1.0 169,032 + -0.0 169,272 - SMa0303 0.24 -0.1 169,272 - SMa0303 0.24 +2.6 169,368 - SMa0303 0.35 -0.2 169,368 - SMa0303 0.35 +0.3 169,368 - SMa0303 0.35 -0.1 169,396 - SMa0303 0.38 -0.2 169,506 - SMa0303 0.50 -0.4 169,506 - SMa0303 0.50 -0.5 169,506 - SMa0303 0.50 +0.0 169,507 + SMa0303 0.50 -0.1 169,507 + SMa0303 0.50 +0.9 169,508 - SMa0303 0.51 -0.2 169,508 - SMa0303 0.51 +0.4 169,538 + SMa0303 0.54 -0.0 169,539 - SMa0303 0.54 -1.1 169,726 + SMa0303 0.75 -0.4 169,805 - SMa0303 0.84 +0.9 169,805 - SMa0303 0.84 +0.4 169,866 - -0.8 169,866 - -0.7
Or see this region's nucleotide sequence