Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21520

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21519 and SM_b21520 overlap by 4 nucleotidesSM_b21520 and SM_b21521 overlap by 11 nucleotidesSM_b21521 and SM_b21522 are separated by 392 nucleotides SM_b21519: SM_b21519 - two-component sensor histidine kinase, at 1,443,139 to 1,444,611 _b21519 SM_b21520: SM_b21520 - two-component response regulator protein, at 1,444,608 to 1,445,267 _b21520 SM_b21521: SM_b21521 - hypothetical protein, at 1,445,257 to 1,445,715 _b21521 SM_b21522: SM_b21522 - cell division topological specificity factor MinE, at 1,446,108 to 1,446,371 _b21522 Position (kb) 1444 1445 1446Strain fitness (log2 ratio) -2 -1 0 1 2at 1443.691 kb on + strand, within SM_b21519at 1443.692 kb on - strand, within SM_b21519at 1443.692 kb on - strand, within SM_b21519at 1443.692 kb on - strand, within SM_b21519at 1444.054 kb on + strand, within SM_b21519at 1444.054 kb on + strand, within SM_b21519at 1444.055 kb on - strand, within SM_b21519at 1444.055 kb on - strand, within SM_b21519at 1444.328 kb on + strand, within SM_b21519at 1444.329 kb on - strand, within SM_b21519at 1444.334 kb on + strand, within SM_b21519at 1444.334 kb on + strand, within SM_b21519at 1444.334 kb on + strand, within SM_b21519at 1444.335 kb on - strand, within SM_b21519at 1444.335 kb on - strand, within SM_b21519at 1444.335 kb on - strand, within SM_b21519at 1444.336 kb on + strand, within SM_b21519at 1444.336 kb on + strand, within SM_b21519at 1444.336 kb on + strand, within SM_b21519at 1444.359 kb on + strand, within SM_b21519at 1444.360 kb on - strand, within SM_b21519at 1444.360 kb on - strand, within SM_b21519at 1444.428 kb on + strand, within SM_b21519at 1444.476 kb on - strandat 1444.506 kb on + strandat 1444.915 kb on - strand, within SM_b21520at 1444.983 kb on + strand, within SM_b21520at 1444.983 kb on + strandat 1444.983 kb on + strand, within SM_b21520at 1444.983 kb on + strand, within SM_b21520at 1444.983 kb on + strand, within SM_b21520at 1444.983 kb on + strand, within SM_b21520at 1444.984 kb on - strand, within SM_b21520at 1444.984 kb on - strand, within SM_b21520at 1445.642 kb on + strand, within SM_b21521at 1445.737 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
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1,443,691 + SM_b21519 0.37 -0.7
1,443,692 - SM_b21519 0.38 -0.0
1,443,692 - SM_b21519 0.38 +0.5
1,443,692 - SM_b21519 0.38 -0.3
1,444,054 + SM_b21519 0.62 +0.8
1,444,054 + SM_b21519 0.62 +0.4
1,444,055 - SM_b21519 0.62 +0.9
1,444,055 - SM_b21519 0.62 -0.2
1,444,328 + SM_b21519 0.81 +0.1
1,444,329 - SM_b21519 0.81 -0.1
1,444,334 + SM_b21519 0.81 +0.1
1,444,334 + SM_b21519 0.81 -0.1
1,444,334 + SM_b21519 0.81 +0.4
1,444,335 - SM_b21519 0.81 +0.1
1,444,335 - SM_b21519 0.81 +0.3
1,444,335 - SM_b21519 0.81 +0.1
1,444,336 + SM_b21519 0.81 +1.7
1,444,336 + SM_b21519 0.81 +0.1
1,444,336 + SM_b21519 0.81 -0.3
1,444,359 + SM_b21519 0.83 +0.3
1,444,360 - SM_b21519 0.83 -0.3
1,444,360 - SM_b21519 0.83 -0.6
1,444,428 + SM_b21519 0.88 -0.0
1,444,476 - -0.1
1,444,506 + +0.2
1,444,915 - SM_b21520 0.47 +0.1
1,444,983 + SM_b21520 0.57 -0.1
1,444,983 + +1.8
1,444,983 + SM_b21520 0.57 -0.4
1,444,983 + SM_b21520 0.57 -2.7
1,444,983 + SM_b21520 0.57 +1.1
1,444,983 + SM_b21520 0.57 +0.5
1,444,984 - SM_b21520 0.57 +0.9
1,444,984 - SM_b21520 0.57 +2.0
1,445,642 + SM_b21521 0.84 +1.0
1,445,737 + -1.1

Or see this region's nucleotide sequence