Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21519 and SM_b21520 overlap by 4 nucleotides SM_b21520 and SM_b21521 overlap by 11 nucleotides SM_b21521 and SM_b21522 are separated by 392 nucleotides
SM_b21519: SM_b21519 - two-component sensor histidine kinase, at 1,443,139 to 1,444,611
_b21519
SM_b21520: SM_b21520 - two-component response regulator protein, at 1,444,608 to 1,445,267
_b21520
SM_b21521: SM_b21521 - hypothetical protein, at 1,445,257 to 1,445,715
_b21521
SM_b21522: SM_b21522 - cell division topological specificity factor MinE, at 1,446,108 to 1,446,371
_b21522
Position (kb)
1444
1445
1446 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1443.691 kb on + strand, within SM_b21519 at 1443.692 kb on - strand, within SM_b21519 at 1443.692 kb on - strand, within SM_b21519 at 1443.692 kb on - strand, within SM_b21519 at 1444.054 kb on + strand, within SM_b21519 at 1444.054 kb on + strand, within SM_b21519 at 1444.055 kb on - strand, within SM_b21519 at 1444.055 kb on - strand, within SM_b21519 at 1444.328 kb on + strand, within SM_b21519 at 1444.329 kb on - strand, within SM_b21519 at 1444.334 kb on + strand, within SM_b21519 at 1444.334 kb on + strand, within SM_b21519 at 1444.334 kb on + strand, within SM_b21519 at 1444.335 kb on - strand, within SM_b21519 at 1444.335 kb on - strand, within SM_b21519 at 1444.335 kb on - strand, within SM_b21519 at 1444.336 kb on + strand, within SM_b21519 at 1444.336 kb on + strand, within SM_b21519 at 1444.336 kb on + strand, within SM_b21519 at 1444.359 kb on + strand, within SM_b21519 at 1444.360 kb on - strand, within SM_b21519 at 1444.360 kb on - strand, within SM_b21519 at 1444.428 kb on + strand, within SM_b21519 at 1444.476 kb on - strand at 1444.506 kb on + strand at 1444.915 kb on - strand, within SM_b21520 at 1444.983 kb on + strand, within SM_b21520 at 1444.983 kb on + strand at 1444.983 kb on + strand, within SM_b21520 at 1444.983 kb on + strand, within SM_b21520 at 1444.983 kb on + strand, within SM_b21520 at 1444.983 kb on + strand, within SM_b21520 at 1444.984 kb on - strand, within SM_b21520 at 1444.984 kb on - strand, within SM_b21520 at 1445.642 kb on + strand, within SM_b21521 at 1445.737 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 1,443,691 + SM_b21519 0.37 -0.7 1,443,692 - SM_b21519 0.38 -0.0 1,443,692 - SM_b21519 0.38 +0.5 1,443,692 - SM_b21519 0.38 -0.3 1,444,054 + SM_b21519 0.62 +0.8 1,444,054 + SM_b21519 0.62 +0.4 1,444,055 - SM_b21519 0.62 +0.9 1,444,055 - SM_b21519 0.62 -0.2 1,444,328 + SM_b21519 0.81 +0.1 1,444,329 - SM_b21519 0.81 -0.1 1,444,334 + SM_b21519 0.81 +0.1 1,444,334 + SM_b21519 0.81 -0.1 1,444,334 + SM_b21519 0.81 +0.4 1,444,335 - SM_b21519 0.81 +0.1 1,444,335 - SM_b21519 0.81 +0.3 1,444,335 - SM_b21519 0.81 +0.1 1,444,336 + SM_b21519 0.81 +1.7 1,444,336 + SM_b21519 0.81 +0.1 1,444,336 + SM_b21519 0.81 -0.3 1,444,359 + SM_b21519 0.83 +0.3 1,444,360 - SM_b21519 0.83 -0.3 1,444,360 - SM_b21519 0.83 -0.6 1,444,428 + SM_b21519 0.88 -0.0 1,444,476 - -0.1 1,444,506 + +0.2 1,444,915 - SM_b21520 0.47 +0.1 1,444,983 + SM_b21520 0.57 -0.1 1,444,983 + +1.8 1,444,983 + SM_b21520 0.57 -0.4 1,444,983 + SM_b21520 0.57 -2.7 1,444,983 + SM_b21520 0.57 +1.1 1,444,983 + SM_b21520 0.57 +0.5 1,444,984 - SM_b21520 0.57 +0.9 1,444,984 - SM_b21520 0.57 +2.0 1,445,642 + SM_b21521 0.84 +1.0 1,445,737 + -1.1
Or see this region's nucleotide sequence