Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21244

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21243 and SM_b21244 are separated by 230 nucleotidesSM_b21244 and SM_b21245 are separated by 489 nucleotides SM_b21243: SM_b21243 - sulfotransferase, at 810,685 to 811,611 _b21243 SM_b21244: SM_b21244 - membrane protein, polysaccharide transporter, at 811,842 to 813,131 _b21244 SM_b21245: SM_b21245 - OMA family outer membrane protein, at 813,621 to 814,871 _b21245 Position (kb) 811 812 813 814Strain fitness (log2 ratio) -2 -1 0 1 2at 811.208 kb on + strand, within SM_b21243at 811.218 kb on - strand, within SM_b21243at 811.310 kb on + strand, within SM_b21243at 811.310 kb on + strand, within SM_b21243at 811.310 kb on + strand, within SM_b21243at 811.311 kb on - strand, within SM_b21243at 811.311 kb on - strand, within SM_b21243at 811.371 kb on - strand, within SM_b21243at 811.371 kb on - strand, within SM_b21243at 811.391 kb on + strand, within SM_b21243at 811.395 kb on - strand, within SM_b21243at 811.406 kb on + strand, within SM_b21243at 811.433 kb on - strand, within SM_b21243at 811.433 kb on - strand, within SM_b21243at 811.669 kb on - strandat 811.677 kb on - strandat 811.744 kb on + strandat 811.941 kb on + strandat 811.942 kb on - strandat 812.007 kb on + strand, within SM_b21244at 812.143 kb on - strand, within SM_b21244at 812.161 kb on + strand, within SM_b21244at 812.162 kb on - strand, within SM_b21244at 812.331 kb on + strand, within SM_b21244at 812.341 kb on + strand, within SM_b21244at 812.342 kb on - strand, within SM_b21244at 812.372 kb on - strand, within SM_b21244at 812.471 kb on + strand, within SM_b21244at 812.583 kb on + strand, within SM_b21244at 812.584 kb on - strand, within SM_b21244at 812.584 kb on - strand, within SM_b21244at 812.671 kb on + strand, within SM_b21244at 812.672 kb on - strand, within SM_b21244at 812.856 kb on - strand, within SM_b21244at 812.968 kb on - strand, within SM_b21244at 812.968 kb on - strand, within SM_b21244at 812.992 kb on + strand, within SM_b21244at 812.993 kb on - strand, within SM_b21244at 813.003 kb on + strandat 813.004 kb on - strandat 813.004 kb on - strandat 813.212 kb on - strandat 813.212 kb on - strandat 813.219 kb on - strandat 813.226 kb on - strandat 813.241 kb on + strandat 813.241 kb on + strandat 813.271 kb on + strandat 813.311 kb on - strandat 813.318 kb on + strandat 813.318 kb on + strandat 813.319 kb on - strandat 813.319 kb on - strandat 813.530 kb on - strandat 813.562 kb on + strandat 813.564 kb on + strandat 813.598 kb on - strandat 813.598 kb on - strandat 813.645 kb on - strandat 813.645 kb on - strandat 813.645 kb on - strandat 813.645 kb on - strandat 813.719 kb on + strandat 813.719 kb on + strandat 813.720 kb on - strandat 813.720 kb on - strandat 813.725 kb on + strandat 813.726 kb on - strandat 813.899 kb on + strand, within SM_b21245at 813.900 kb on - strand, within SM_b21245at 814.023 kb on + strand, within SM_b21245at 814.023 kb on + strand, within SM_b21245at 814.024 kb on - strand, within SM_b21245

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
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811,208 + SM_b21243 0.56 -1.6
811,218 - SM_b21243 0.57 -1.3
811,310 + SM_b21243 0.67 +0.3
811,310 + SM_b21243 0.67 -0.6
811,310 + SM_b21243 0.67 -0.0
811,311 - SM_b21243 0.68 +0.7
811,311 - SM_b21243 0.68 +0.6
811,371 - SM_b21243 0.74 -0.1
811,371 - SM_b21243 0.74 +1.3
811,391 + SM_b21243 0.76 -0.5
811,395 - SM_b21243 0.77 -0.0
811,406 + SM_b21243 0.78 -0.2
811,433 - SM_b21243 0.81 -0.0
811,433 - SM_b21243 0.81 -0.3
811,669 - -0.2
811,677 - -0.8
811,744 + +0.3
811,941 + -0.2
811,942 - +1.0
812,007 + SM_b21244 0.13 -1.7
812,143 - SM_b21244 0.23 +0.8
812,161 + SM_b21244 0.25 -0.3
812,162 - SM_b21244 0.25 +0.0
812,331 + SM_b21244 0.38 -0.0
812,341 + SM_b21244 0.39 +1.4
812,342 - SM_b21244 0.39 +0.2
812,372 - SM_b21244 0.41 -0.4
812,471 + SM_b21244 0.49 +1.2
812,583 + SM_b21244 0.57 +2.0
812,584 - SM_b21244 0.58 -0.2
812,584 - SM_b21244 0.58 +0.4
812,671 + SM_b21244 0.64 +0.7
812,672 - SM_b21244 0.64 +0.2
812,856 - SM_b21244 0.79 +0.2
812,968 - SM_b21244 0.87 +1.8
812,968 - SM_b21244 0.87 +0.4
812,992 + SM_b21244 0.89 -0.4
812,993 - SM_b21244 0.89 -0.2
813,003 + -0.9
813,004 - +0.7
813,004 - +1.0
813,212 - -0.2
813,212 - +0.3
813,219 - -1.0
813,226 - -0.5
813,241 + -0.6
813,241 + -0.2
813,271 + -0.6
813,311 - +0.3
813,318 + +0.8
813,318 + -0.4
813,319 - -0.1
813,319 - -0.4
813,530 - +0.2
813,562 + -0.4
813,564 + +0.2
813,598 - -0.2
813,598 - +0.1
813,645 - +0.4
813,645 - -0.6
813,645 - +0.5
813,645 - -0.2
813,719 + +0.1
813,719 + +0.3
813,720 - -2.0
813,720 - -0.1
813,725 + -1.4
813,726 - +0.0
813,899 + SM_b21245 0.22 +0.1
813,900 - SM_b21245 0.22 +0.2
814,023 + SM_b21245 0.32 -0.3
814,023 + SM_b21245 0.32 +0.7
814,024 - SM_b21245 0.32 +1.5

Or see this region's nucleotide sequence