Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21131 and SM_b21132 overlap by 17 nucleotides SM_b21132 and SM_b21133 overlap by 4 nucleotides SM_b21133 and SM_b21134 are separated by 264 nucleotides
SM_b21131: SM_b21131 - sulfate ABC transporter permease, at 770,163 to 771,044
_b21131
SM_b21132: SM_b21132 - sulfate ABC transporter permease, at 771,028 to 771,894
_b21132
SM_b21133: SM_b21133 - sulfate ABC transporter substrate-binding protein, at 771,891 to 772,916
_b21133
SM_b21134: SM_b21134 - amino acid processing enzyme, low specificity D-threonine aldolase, at 773,181 to 774,239
_b21134
Position (kb) 771
772
773 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 771.008 kb on + strand at 771.009 kb on - strand at 771.012 kb on - strand at 771.012 kb on - strand at 771.020 kb on - strand at 771.038 kb on + strand at 771.044 kb on + strand at 771.044 kb on + strand at 771.230 kb on + strand, within SM_b21132 at 771.231 kb on - strand, within SM_b21132 at 771.510 kb on - strand, within SM_b21132 at 771.510 kb on - strand, within SM_b21132 at 771.908 kb on - strand at 771.908 kb on - strand at 771.908 kb on - strand at 772.052 kb on - strand, within SM_b21133 at 772.054 kb on + strand, within SM_b21133 at 772.054 kb on + strand, within SM_b21133 at 772.055 kb on - strand, within SM_b21133 at 772.091 kb on - strand, within SM_b21133 at 772.096 kb on + strand, within SM_b21133 at 772.096 kb on + strand, within SM_b21133 at 772.105 kb on + strand, within SM_b21133 at 772.240 kb on + strand, within SM_b21133 at 772.241 kb on - strand, within SM_b21133 at 772.266 kb on + strand, within SM_b21133 at 772.266 kb on + strand, within SM_b21133 at 772.266 kb on + strand, within SM_b21133 at 772.266 kb on + strand, within SM_b21133 at 772.266 kb on + strand, within SM_b21133 at 772.267 kb on - strand, within SM_b21133 at 772.357 kb on + strand, within SM_b21133 at 772.357 kb on + strand, within SM_b21133 at 772.357 kb on + strand, within SM_b21133 at 772.386 kb on - strand, within SM_b21133 at 772.552 kb on + strand, within SM_b21133 at 772.553 kb on - strand, within SM_b21133 at 772.783 kb on + strand, within SM_b21133 at 772.784 kb on - strand, within SM_b21133 at 772.784 kb on - strand, within SM_b21133 at 772.784 kb on - strand, within SM_b21133 at 772.804 kb on + strand, within SM_b21133 at 772.804 kb on + strand, within SM_b21133 at 772.904 kb on + strand at 772.904 kb on + strand at 772.905 kb on - strand at 772.979 kb on - strand at 772.987 kb on + strand at 772.988 kb on - strand at 773.080 kb on - strand at 773.116 kb on + strand at 773.145 kb on + strand at 773.145 kb on + strand at 773.145 kb on + strand at 773.146 kb on - strand at 773.372 kb on + strand, within SM_b21134 at 773.376 kb on + strand, within SM_b21134 at 773.376 kb on + strand, within SM_b21134 at 773.377 kb on - strand, within SM_b21134 at 773.377 kb on - strand, within SM_b21134 at 773.377 kb on - strand, within SM_b21134 at 773.377 kb on - strand, within SM_b21134 at 773.377 kb on - strand, within SM_b21134 at 773.377 kb on - strand, within SM_b21134 at 773.419 kb on - strand, within SM_b21134 at 773.559 kb on - strand, within SM_b21134 at 773.560 kb on + strand, within SM_b21134 at 773.560 kb on + strand, within SM_b21134 at 773.561 kb on - strand, within SM_b21134 at 773.561 kb on - strand, within SM_b21134 at 773.561 kb on - strand, within SM_b21134 at 773.566 kb on + strand, within SM_b21134 at 773.566 kb on + strand, within SM_b21134 at 773.567 kb on - strand, within SM_b21134 at 773.567 kb on - strand, within SM_b21134 at 773.567 kb on - strand, within SM_b21134 at 773.570 kb on + strand, within SM_b21134 at 773.570 kb on + strand, within SM_b21134 at 773.571 kb on - strand, within SM_b21134 at 773.571 kb on - strand, within SM_b21134 at 773.618 kb on + strand, within SM_b21134 at 773.639 kb on + strand, within SM_b21134 at 773.639 kb on + strand, within SM_b21134 at 773.639 kb on + strand, within SM_b21134 at 773.640 kb on - strand, within SM_b21134 at 773.640 kb on - strand, within SM_b21134 at 773.640 kb on - strand, within SM_b21134 at 773.640 kb on - strand, within SM_b21134 at 773.642 kb on + strand, within SM_b21134 at 773.732 kb on - strand, within SM_b21134 at 773.732 kb on - strand, within SM_b21134 at 773.732 kb on - strand, within SM_b21134
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 771,008 + +0.6 771,009 - -0.1 771,012 - -0.4 771,012 - +0.2 771,020 - -1.8 771,038 + -0.9 771,044 + +0.4 771,044 + -0.3 771,230 + SM_b21132 0.23 +0.2 771,231 - SM_b21132 0.23 -1.5 771,510 - SM_b21132 0.56 -1.2 771,510 - SM_b21132 0.56 +1.7 771,908 - -3.2 771,908 - +0.5 771,908 - -0.2 772,052 - SM_b21133 0.16 -0.5 772,054 + SM_b21133 0.16 -0.7 772,054 + SM_b21133 0.16 -0.5 772,055 - SM_b21133 0.16 -0.7 772,091 - SM_b21133 0.19 -0.8 772,096 + SM_b21133 0.20 -0.5 772,096 + SM_b21133 0.20 -1.1 772,105 + SM_b21133 0.21 -0.1 772,240 + SM_b21133 0.34 -0.0 772,241 - SM_b21133 0.34 -1.3 772,266 + SM_b21133 0.37 -0.6 772,266 + SM_b21133 0.37 -0.3 772,266 + SM_b21133 0.37 -1.2 772,266 + SM_b21133 0.37 -0.3 772,266 + SM_b21133 0.37 +0.2 772,267 - SM_b21133 0.37 +1.3 772,357 + SM_b21133 0.45 -1.2 772,357 + SM_b21133 0.45 -1.2 772,357 + SM_b21133 0.45 -0.9 772,386 - SM_b21133 0.48 -1.1 772,552 + SM_b21133 0.64 -0.8 772,553 - SM_b21133 0.65 -0.9 772,783 + SM_b21133 0.87 -0.7 772,784 - SM_b21133 0.87 -1.0 772,784 - SM_b21133 0.87 +0.4 772,784 - SM_b21133 0.87 -1.1 772,804 + SM_b21133 0.89 -0.3 772,804 + SM_b21133 0.89 -0.5 772,904 + -1.0 772,904 + -1.0 772,905 - -0.8 772,979 - -0.3 772,987 + -1.1 772,988 - +0.2 773,080 - -0.1 773,116 + -1.0 773,145 + +0.1 773,145 + -0.7 773,145 + -0.4 773,146 - +0.9 773,372 + SM_b21134 0.18 -0.2 773,376 + SM_b21134 0.18 -0.3 773,376 + SM_b21134 0.18 -0.3 773,377 - SM_b21134 0.19 +0.8 773,377 - SM_b21134 0.19 -0.6 773,377 - SM_b21134 0.19 +0.0 773,377 - SM_b21134 0.19 -0.0 773,377 - SM_b21134 0.19 +1.2 773,377 - SM_b21134 0.19 +0.0 773,419 - SM_b21134 0.22 -0.7 773,559 - SM_b21134 0.36 +0.5 773,560 + SM_b21134 0.36 +0.2 773,560 + SM_b21134 0.36 -0.4 773,561 - SM_b21134 0.36 +0.2 773,561 - SM_b21134 0.36 -0.4 773,561 - SM_b21134 0.36 +0.1 773,566 + SM_b21134 0.36 +0.1 773,566 + SM_b21134 0.36 -0.4 773,567 - SM_b21134 0.36 +0.3 773,567 - SM_b21134 0.36 -0.1 773,567 - SM_b21134 0.36 -1.1 773,570 + SM_b21134 0.37 +0.4 773,570 + SM_b21134 0.37 -0.6 773,571 - SM_b21134 0.37 -0.4 773,571 - SM_b21134 0.37 -0.4 773,618 + SM_b21134 0.41 -1.4 773,639 + SM_b21134 0.43 +0.2 773,639 + SM_b21134 0.43 +0.7 773,639 + SM_b21134 0.43 -0.2 773,640 - SM_b21134 0.43 +0.2 773,640 - SM_b21134 0.43 +0.6 773,640 - SM_b21134 0.43 -0.2 773,640 - SM_b21134 0.43 +0.5 773,642 + SM_b21134 0.44 -0.1 773,732 - SM_b21134 0.52 +0.1 773,732 - SM_b21134 0.52 -0.8 773,732 - SM_b21134 0.52 +0.2
Or see this region's nucleotide sequence