Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21090 and SM_b21091 are separated by 304 nucleotides SM_b21091 and SM_b21092 are separated by 4 nucleotides SM_b21092 and SM_b21093 are separated by 24 nucleotides
SM_b21090: SM_b21090 - hypothetical protein, at 732,456 to 733,592
_b21090
SM_b21091: SM_b21091 - cell-wall lytic enzyme, muramidase (lysozyme) protein, at 733,897 to 734,907
_b21091
SM_b21092: SM_b21092 - acetyltransferase, at 734,912 to 735,388
_b21092
SM_b21093: SM_b21093 - LysR family transcriptional regulator, at 735,413 to 736,315
_b21093
Position (kb) 733
734
735 Strain fitness (log2 ratio) -1
0
1
2 at 732.930 kb on + strand, within SM_b21090 at 732.930 kb on + strand, within SM_b21090 at 733.134 kb on + strand, within SM_b21090 at 733.134 kb on + strand, within SM_b21090 at 733.134 kb on + strand, within SM_b21090 at 733.134 kb on + strand, within SM_b21090 at 733.135 kb on - strand, within SM_b21090 at 733.141 kb on - strand, within SM_b21090 at 733.150 kb on - strand, within SM_b21090 at 733.250 kb on - strand, within SM_b21090 at 733.470 kb on + strand, within SM_b21090 at 733.471 kb on - strand, within SM_b21090 at 733.471 kb on - strand, within SM_b21090 at 733.670 kb on - strand at 733.670 kb on - strand at 733.670 kb on - strand at 733.733 kb on + strand at 735.125 kb on + strand, within SM_b21092 at 735.170 kb on + strand, within SM_b21092 at 735.171 kb on - strand, within SM_b21092 at 735.305 kb on + strand, within SM_b21092 at 735.306 kb on - strand, within SM_b21092 at 735.323 kb on - strand, within SM_b21092 at 735.577 kb on + strand, within SM_b21093 at 735.639 kb on + strand, within SM_b21093 at 735.640 kb on - strand, within SM_b21093 at 735.640 kb on - strand, within SM_b21093 at 735.640 kb on - strand, within SM_b21093 at 735.702 kb on + strand, within SM_b21093 at 735.703 kb on - strand, within SM_b21093 at 735.703 kb on - strand, within SM_b21093 at 735.792 kb on + strand, within SM_b21093 at 735.792 kb on + strand, within SM_b21093 at 735.793 kb on - strand, within SM_b21093 at 735.834 kb on + strand, within SM_b21093 at 735.834 kb on + strand, within SM_b21093 at 735.834 kb on + strand at 735.834 kb on + strand, within SM_b21093 at 735.834 kb on + strand, within SM_b21093 at 735.834 kb on + strand, within SM_b21093 at 735.835 kb on - strand, within SM_b21093 at 735.878 kb on + strand, within SM_b21093 at 735.878 kb on + strand, within SM_b21093 at 735.879 kb on - strand, within SM_b21093
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 732,930 + SM_b21090 0.42 -0.9 732,930 + SM_b21090 0.42 -0.4 733,134 + SM_b21090 0.60 +0.3 733,134 + SM_b21090 0.60 -1.1 733,134 + SM_b21090 0.60 +0.2 733,134 + SM_b21090 0.60 +0.1 733,135 - SM_b21090 0.60 +0.3 733,141 - SM_b21090 0.60 +0.5 733,150 - SM_b21090 0.61 +0.8 733,250 - SM_b21090 0.70 +1.2 733,470 + SM_b21090 0.89 -0.0 733,471 - SM_b21090 0.89 -0.3 733,471 - SM_b21090 0.89 -0.1 733,670 - -0.9 733,670 - -0.9 733,670 - +0.6 733,733 + -0.3 735,125 + SM_b21092 0.45 -0.3 735,170 + SM_b21092 0.54 -0.3 735,171 - SM_b21092 0.54 +0.3 735,305 + SM_b21092 0.82 +0.4 735,306 - SM_b21092 0.83 +0.0 735,323 - SM_b21092 0.86 +0.1 735,577 + SM_b21093 0.18 -0.8 735,639 + SM_b21093 0.25 -0.0 735,640 - SM_b21093 0.25 -0.5 735,640 - SM_b21093 0.25 -0.3 735,640 - SM_b21093 0.25 +0.1 735,702 + SM_b21093 0.32 +2.2 735,703 - SM_b21093 0.32 -0.3 735,703 - SM_b21093 0.32 -0.4 735,792 + SM_b21093 0.42 -0.6 735,792 + SM_b21093 0.42 -0.7 735,793 - SM_b21093 0.42 -0.0 735,834 + SM_b21093 0.47 +0.3 735,834 + SM_b21093 0.47 -0.2 735,834 + +1.6 735,834 + SM_b21093 0.47 -0.0 735,834 + SM_b21093 0.47 -0.1 735,834 + SM_b21093 0.47 +1.2 735,835 - SM_b21093 0.47 -0.1 735,878 + SM_b21093 0.51 -0.3 735,878 + SM_b21093 0.51 +0.3 735,879 - SM_b21093 0.52 -0.5
Or see this region's nucleotide sequence