Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21086 and SM_b21087 are separated by 144 nucleotides SM_b21087 and SM_b21088 are separated by 323 nucleotides SM_b21088 and SM_b21089 are separated by 162 nucleotides
SM_b21086: SM_b21086 - hypothetical protein, at 725,358 to 725,834
_b21086
SM_b21087: SM_b21087 - conjugal transfer protein, at 725,979 to 730,598
_b21087
SM_b21088: SM_b21088 - hypothetical protein, at 730,922 to 731,137
_b21088
SM_b21089: SM_b21089 - membrane-anchored racemase, at 731,300 to 732,370
_b21089
Position (kb) 725
726
727
728
729
730
731 Strain fitness (log2 ratio) -2
-1
0
1 at 725.064 kb on + strand at 725.122 kb on + strand at 725.122 kb on + strand at 725.123 kb on - strand at 725.123 kb on - strand at 725.125 kb on + strand at 725.125 kb on + strand at 725.125 kb on + strand at 725.126 kb on - strand at 725.126 kb on - strand at 725.167 kb on - strand at 725.230 kb on + strand at 725.231 kb on - strand at 725.231 kb on - strand at 725.354 kb on + strand at 725.354 kb on + strand at 725.354 kb on + strand at 725.355 kb on - strand at 725.375 kb on - strand at 725.375 kb on - strand at 725.412 kb on + strand, within SM_b21086 at 725.412 kb on + strand, within SM_b21086 at 725.412 kb on + strand, within SM_b21086 at 725.413 kb on - strand, within SM_b21086 at 725.413 kb on - strand, within SM_b21086 at 725.413 kb on - strand, within SM_b21086 at 725.451 kb on + strand, within SM_b21086 at 725.452 kb on - strand, within SM_b21086 at 725.452 kb on - strand, within SM_b21086 at 725.452 kb on - strand, within SM_b21086 at 725.492 kb on - strand, within SM_b21086 at 725.496 kb on - strand, within SM_b21086 at 725.496 kb on - strand, within SM_b21086 at 725.506 kb on - strand, within SM_b21086 at 725.543 kb on - strand, within SM_b21086 at 725.543 kb on - strand, within SM_b21086 at 725.550 kb on + strand, within SM_b21086 at 725.550 kb on + strand, within SM_b21086 at 725.802 kb on + strand at 725.803 kb on - strand at 725.803 kb on - strand at 725.803 kb on - strand at 725.803 kb on - strand at 725.803 kb on - strand at 725.823 kb on + strand at 725.827 kb on + strand at 725.854 kb on - strand at 725.877 kb on - strand at 725.937 kb on - strand at 725.937 kb on - strand at 726.102 kb on + strand at 726.381 kb on + strand at 726.381 kb on + strand at 726.877 kb on - strand, within SM_b21087 at 728.333 kb on + strand, within SM_b21087 at 728.433 kb on + strand, within SM_b21087 at 728.502 kb on - strand, within SM_b21087 at 730.571 kb on + strand at 730.589 kb on + strand at 730.590 kb on - strand at 730.590 kb on - strand at 730.596 kb on + strand at 730.597 kb on - strand at 730.597 kb on - strand at 730.597 kb on - strand at 730.677 kb on - strand at 730.784 kb on + strand at 730.784 kb on + strand at 730.785 kb on - strand at 730.912 kb on + strand at 730.912 kb on + strand at 730.913 kb on - strand at 730.938 kb on - strand at 730.998 kb on + strand, within SM_b21088 at 730.999 kb on - strand, within SM_b21088 at 730.999 kb on - strand, within SM_b21088 at 730.999 kb on - strand, within SM_b21088 at 730.999 kb on - strand, within SM_b21088 at 731.015 kb on + strand, within SM_b21088 at 731.015 kb on + strand, within SM_b21088 at 731.015 kb on + strand, within SM_b21088 at 731.106 kb on + strand, within SM_b21088 at 731.141 kb on + strand at 731.141 kb on + strand at 731.142 kb on - strand at 731.142 kb on - strand at 731.155 kb on - strand at 731.291 kb on + strand at 731.291 kb on + strand at 731.291 kb on + strand at 731.292 kb on - strand at 731.295 kb on + strand at 731.296 kb on - strand at 731.296 kb on - strand at 731.296 kb on - strand at 731.296 kb on - strand at 731.372 kb on + strand at 731.373 kb on - strand at 731.532 kb on + strand, within SM_b21089 at 731.594 kb on - strand, within SM_b21089 at 731.594 kb on - strand, within SM_b21089
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 725,064 + -0.2 725,122 + +0.2 725,122 + -0.2 725,123 - -1.7 725,123 - +0.7 725,125 + -0.1 725,125 + -0.0 725,125 + -0.1 725,126 - +0.2 725,126 - +0.7 725,167 - -0.6 725,230 + +0.3 725,231 - -0.2 725,231 - -1.2 725,354 + +0.3 725,354 + +0.0 725,354 + +0.0 725,355 - -0.4 725,375 - +0.1 725,375 - -0.6 725,412 + SM_b21086 0.11 +0.5 725,412 + SM_b21086 0.11 -0.3 725,412 + SM_b21086 0.11 +0.1 725,413 - SM_b21086 0.12 +0.3 725,413 - SM_b21086 0.12 -0.2 725,413 - SM_b21086 0.12 +0.2 725,451 + SM_b21086 0.19 +0.3 725,452 - SM_b21086 0.20 -1.8 725,452 - SM_b21086 0.20 -0.9 725,452 - SM_b21086 0.20 -0.8 725,492 - SM_b21086 0.28 -0.2 725,496 - SM_b21086 0.29 -0.3 725,496 - SM_b21086 0.29 -1.2 725,506 - SM_b21086 0.31 +0.0 725,543 - SM_b21086 0.39 -0.5 725,543 - SM_b21086 0.39 -0.1 725,550 + SM_b21086 0.40 -0.4 725,550 + SM_b21086 0.40 +0.4 725,802 + +0.1 725,803 - +0.2 725,803 - -0.5 725,803 - +0.7 725,803 - -2.4 725,803 - -1.1 725,823 + +1.2 725,827 + +0.7 725,854 - -0.2 725,877 - +0.1 725,937 - +0.6 725,937 - -0.4 726,102 + -0.2 726,381 + -0.0 726,381 + +0.0 726,877 - SM_b21087 0.19 +1.2 728,333 + SM_b21087 0.51 +0.5 728,433 + SM_b21087 0.53 +0.4 728,502 - SM_b21087 0.55 +0.6 730,571 + +0.8 730,589 + +0.0 730,590 - +0.2 730,590 - -0.7 730,596 + -1.4 730,597 - +1.4 730,597 - -0.0 730,597 - +0.2 730,677 - +0.2 730,784 + +0.7 730,784 + +0.8 730,785 - +0.8 730,912 + -0.8 730,912 + -0.4 730,913 - -1.4 730,938 - -0.2 730,998 + SM_b21088 0.35 -0.9 730,999 - SM_b21088 0.36 -0.7 730,999 - SM_b21088 0.36 +0.4 730,999 - SM_b21088 0.36 -0.2 730,999 - SM_b21088 0.36 +0.1 731,015 + SM_b21088 0.43 -0.7 731,015 + SM_b21088 0.43 -0.3 731,015 + SM_b21088 0.43 -0.3 731,106 + SM_b21088 0.85 -0.7 731,141 + -0.1 731,141 + -0.1 731,142 - -0.1 731,142 - -0.6 731,155 - +0.1 731,291 + -0.5 731,291 + -0.1 731,291 + -0.1 731,292 - -0.5 731,295 + +0.7 731,296 - +0.0 731,296 - +0.5 731,296 - -1.0 731,296 - -0.2 731,372 + +0.5 731,373 - +0.1 731,532 + SM_b21089 0.22 -0.2 731,594 - SM_b21089 0.27 +0.6 731,594 - SM_b21089 0.27 -0.1
Or see this region's nucleotide sequence