Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20835 and SM_b20836 overlap by 20 nucleotides SM_b20836 and SM_b20837 are separated by 540 nucleotides SM_b20837 and SM_b20838 are separated by 49 nucleotides
SM_b20835: SM_b20835 - hypothetical protein, at 627,125 to 628,120
_b20835
SM_b20836: SM_b20836 - heme-binding protein, at 628,101 to 628,430
_b20836
SM_b20837: SM_b20837 - hypothetical protein, at 628,971 to 629,195
_b20837
SM_b20838: SM_b20838 - secreted calcium-binding protein, at 629,245 to 630,306
_b20838
Position (kb) 628
629 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 627.109 kb on + strand at 627.110 kb on - strand at 627.226 kb on + strand, within SM_b20835 at 627.226 kb on + strand, within SM_b20835 at 627.262 kb on - strand, within SM_b20835 at 627.277 kb on - strand, within SM_b20835 at 627.405 kb on + strand, within SM_b20835 at 627.405 kb on + strand, within SM_b20835 at 627.405 kb on + strand, within SM_b20835 at 627.405 kb on + strand, within SM_b20835 at 627.405 kb on + strand, within SM_b20835 at 627.406 kb on - strand, within SM_b20835 at 627.406 kb on - strand, within SM_b20835 at 627.406 kb on - strand, within SM_b20835 at 627.436 kb on - strand, within SM_b20835 at 627.448 kb on + strand, within SM_b20835 at 627.449 kb on - strand, within SM_b20835 at 627.501 kb on + strand, within SM_b20835 at 627.501 kb on + strand, within SM_b20835 at 627.501 kb on + strand, within SM_b20835 at 627.501 kb on + strand, within SM_b20835 at 627.502 kb on - strand, within SM_b20835 at 627.569 kb on - strand, within SM_b20835 at 627.627 kb on + strand, within SM_b20835 at 627.628 kb on - strand, within SM_b20835 at 627.666 kb on + strand, within SM_b20835 at 627.667 kb on - strand, within SM_b20835 at 627.679 kb on - strand, within SM_b20835 at 627.753 kb on - strand, within SM_b20835 at 627.777 kb on + strand, within SM_b20835 at 627.777 kb on + strand, within SM_b20835 at 627.778 kb on - strand, within SM_b20835 at 627.778 kb on - strand, within SM_b20835 at 627.829 kb on - strand, within SM_b20835 at 627.885 kb on + strand, within SM_b20835 at 627.886 kb on - strand, within SM_b20835 at 627.886 kb on - strand, within SM_b20835 at 627.886 kb on - strand, within SM_b20835 at 628.107 kb on + strand at 628.130 kb on + strand at 628.131 kb on - strand at 628.232 kb on + strand, within SM_b20836 at 628.233 kb on - strand, within SM_b20836 at 628.321 kb on + strand, within SM_b20836 at 628.321 kb on + strand, within SM_b20836 at 628.321 kb on + strand, within SM_b20836 at 628.359 kb on - strand, within SM_b20836 at 628.405 kb on + strand at 628.476 kb on + strand at 628.476 kb on + strand at 628.477 kb on - strand at 628.477 kb on - strand at 628.481 kb on + strand at 628.481 kb on + strand at 628.481 kb on + strand at 628.482 kb on - strand at 628.505 kb on - strand at 628.644 kb on + strand at 628.645 kb on - strand at 628.645 kb on - strand at 628.697 kb on + strand at 628.697 kb on + strand at 628.697 kb on + strand at 628.697 kb on + strand at 628.697 kb on + strand at 628.698 kb on - strand at 628.698 kb on - strand at 628.698 kb on - strand at 628.854 kb on + strand at 628.855 kb on - strand at 628.972 kb on + strand at 628.972 kb on + strand at 628.972 kb on + strand at 628.973 kb on - strand at 628.973 kb on - strand at 628.973 kb on - strand at 628.974 kb on + strand at 629.059 kb on + strand, within SM_b20837 at 629.059 kb on + strand, within SM_b20837
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 627,109 + -0.6 627,110 - -0.4 627,226 + SM_b20835 0.10 -0.1 627,226 + SM_b20835 0.10 +0.7 627,262 - SM_b20835 0.14 +0.0 627,277 - SM_b20835 0.15 -0.8 627,405 + SM_b20835 0.28 -0.2 627,405 + SM_b20835 0.28 +0.6 627,405 + SM_b20835 0.28 +0.3 627,405 + SM_b20835 0.28 +0.1 627,405 + SM_b20835 0.28 -1.4 627,406 - SM_b20835 0.28 -0.6 627,406 - SM_b20835 0.28 +0.2 627,406 - SM_b20835 0.28 -0.3 627,436 - SM_b20835 0.31 +1.1 627,448 + SM_b20835 0.32 -0.3 627,449 - SM_b20835 0.33 -0.1 627,501 + SM_b20835 0.38 +0.0 627,501 + SM_b20835 0.38 -0.2 627,501 + SM_b20835 0.38 +0.5 627,501 + SM_b20835 0.38 +1.0 627,502 - SM_b20835 0.38 -0.2 627,569 - SM_b20835 0.45 +2.5 627,627 + SM_b20835 0.50 +0.5 627,628 - SM_b20835 0.51 -1.6 627,666 + SM_b20835 0.54 +0.0 627,667 - SM_b20835 0.54 -0.5 627,679 - SM_b20835 0.56 -0.1 627,753 - SM_b20835 0.63 +0.2 627,777 + SM_b20835 0.65 -0.0 627,777 + SM_b20835 0.65 +0.7 627,778 - SM_b20835 0.66 +0.2 627,778 - SM_b20835 0.66 -0.3 627,829 - SM_b20835 0.71 +0.0 627,885 + SM_b20835 0.76 -0.3 627,886 - SM_b20835 0.76 +0.1 627,886 - SM_b20835 0.76 +0.9 627,886 - SM_b20835 0.76 -0.2 628,107 + +0.2 628,130 + +0.8 628,131 - +0.4 628,232 + SM_b20836 0.40 +0.2 628,233 - SM_b20836 0.40 -1.6 628,321 + SM_b20836 0.67 -0.6 628,321 + SM_b20836 0.67 -0.6 628,321 + SM_b20836 0.67 -0.5 628,359 - SM_b20836 0.78 -0.1 628,405 + -0.2 628,476 + +0.9 628,476 + +0.5 628,477 - +0.1 628,477 - -0.5 628,481 + +0.2 628,481 + +0.7 628,481 + +0.5 628,482 - -0.3 628,505 - +0.6 628,644 + -1.7 628,645 - -0.8 628,645 - -0.3 628,697 + -1.0 628,697 + -0.1 628,697 + +0.5 628,697 + -0.0 628,697 + -2.3 628,698 - -0.5 628,698 - -2.8 628,698 - -1.1 628,854 + +0.1 628,855 - -0.6 628,972 + +0.3 628,972 + -0.7 628,972 + +0.2 628,973 - +0.2 628,973 - -0.8 628,973 - +0.6 628,974 + +0.0 629,059 + SM_b20837 0.39 +0.4 629,059 + SM_b20837 0.39 +0.0
Or see this region's nucleotide sequence