Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20528 and SM_b20529 overlap by 14 nucleotides SM_b20529 and SM_b20530 are separated by 32 nucleotides SM_b20530 and SM_b20531 are separated by 234 nucleotides SM_b20531 and SM_b20532 are separated by 1 nucleotides
SM_b20528: SM_b20528 - hypothetical protein, at 552,658 to 553,458
_b20528
SM_b20529: SM_b20529 - hypothetical protein, at 553,445 to 554,374
_b20529
SM_b20530: SM_b20530 - hypothetical protein, at 554,407 to 554,745
_b20530
SM_b20531: SM_b20531 - RNA polymerase sigma factor, at 554,980 to 555,516
_b20531
SM_b20532: SM_b20532 - hypothetical protein, at 555,518 to 556,156
_b20532
Position (kb) 554
555 Strain fitness (log2 ratio) -2
-1
0
1
2 at 553.446 kb on + strand at 553.532 kb on + strand at 553.547 kb on + strand, within SM_b20529 at 553.589 kb on + strand, within SM_b20529 at 553.589 kb on + strand, within SM_b20529 at 553.691 kb on - strand, within SM_b20529 at 553.691 kb on - strand, within SM_b20529 at 553.691 kb on - strand, within SM_b20529 at 553.743 kb on + strand, within SM_b20529 at 553.743 kb on + strand, within SM_b20529 at 553.743 kb on + strand, within SM_b20529 at 553.743 kb on + strand, within SM_b20529 at 553.744 kb on - strand, within SM_b20529 at 553.748 kb on + strand, within SM_b20529 at 553.748 kb on + strand, within SM_b20529 at 553.749 kb on - strand, within SM_b20529 at 553.749 kb on - strand, within SM_b20529 at 553.881 kb on + strand, within SM_b20529 at 553.882 kb on - strand, within SM_b20529 at 553.928 kb on + strand, within SM_b20529 at 553.928 kb on + strand, within SM_b20529 at 553.928 kb on + strand at 553.972 kb on + strand, within SM_b20529 at 553.972 kb on + strand, within SM_b20529 at 553.972 kb on + strand, within SM_b20529 at 553.973 kb on - strand, within SM_b20529 at 553.974 kb on + strand, within SM_b20529 at 553.975 kb on - strand, within SM_b20529 at 553.975 kb on - strand, within SM_b20529 at 553.975 kb on - strand, within SM_b20529 at 554.001 kb on + strand, within SM_b20529 at 554.001 kb on + strand, within SM_b20529 at 554.001 kb on + strand, within SM_b20529 at 554.120 kb on - strand, within SM_b20529 at 554.151 kb on + strand, within SM_b20529 at 554.152 kb on - strand, within SM_b20529 at 554.205 kb on + strand, within SM_b20529 at 554.205 kb on + strand, within SM_b20529 at 554.205 kb on + strand, within SM_b20529 at 554.206 kb on - strand, within SM_b20529 at 554.206 kb on - strand, within SM_b20529 at 554.517 kb on - strand, within SM_b20530 at 554.595 kb on - strand, within SM_b20530 at 554.595 kb on - strand, within SM_b20530 at 554.595 kb on - strand, within SM_b20530 at 554.595 kb on - strand, within SM_b20530 at 554.595 kb on - strand, within SM_b20530 at 554.809 kb on + strand at 554.809 kb on + strand at 554.810 kb on - strand at 554.810 kb on - strand at 554.823 kb on - strand at 554.877 kb on - strand at 554.940 kb on + strand at 554.940 kb on + strand at 554.940 kb on + strand at 554.940 kb on + strand at 554.940 kb on + strand at 554.941 kb on - strand at 554.941 kb on - strand at 554.941 kb on - strand at 554.941 kb on - strand at 554.941 kb on - strand at 555.050 kb on - strand, within SM_b20531 at 555.050 kb on - strand, within SM_b20531 at 555.167 kb on + strand, within SM_b20531 at 555.167 kb on + strand, within SM_b20531 at 555.168 kb on - strand, within SM_b20531 at 555.168 kb on - strand, within SM_b20531 at 555.177 kb on + strand, within SM_b20531 at 555.177 kb on + strand, within SM_b20531 at 555.177 kb on + strand, within SM_b20531 at 555.177 kb on + strand, within SM_b20531 at 555.177 kb on + strand, within SM_b20531 at 555.178 kb on - strand, within SM_b20531 at 555.249 kb on - strand, within SM_b20531 at 555.249 kb on - strand, within SM_b20531 at 555.393 kb on + strand, within SM_b20531 at 555.394 kb on - strand, within SM_b20531 at 555.394 kb on - strand, within SM_b20531 at 555.394 kb on - strand, within SM_b20531 at 555.394 kb on - strand, within SM_b20531 at 555.394 kb on - strand, within SM_b20531 at 555.394 kb on - strand, within SM_b20531 at 555.394 kb on - strand, within SM_b20531 at 555.395 kb on + strand, within SM_b20531 at 555.643 kb on - strand, within SM_b20532 at 555.664 kb on + strand, within SM_b20532 at 555.667 kb on + strand, within SM_b20532
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 553,446 + -0.5 553,532 + +0.5 553,547 + SM_b20529 0.11 -0.2 553,589 + SM_b20529 0.15 +0.9 553,589 + SM_b20529 0.15 -0.1 553,691 - SM_b20529 0.26 -0.5 553,691 - SM_b20529 0.26 -0.0 553,691 - SM_b20529 0.26 +0.3 553,743 + SM_b20529 0.32 +0.4 553,743 + SM_b20529 0.32 -1.2 553,743 + SM_b20529 0.32 -0.1 553,743 + SM_b20529 0.32 +0.1 553,744 - SM_b20529 0.32 -0.8 553,748 + SM_b20529 0.33 +0.4 553,748 + SM_b20529 0.33 -0.3 553,749 - SM_b20529 0.33 +1.1 553,749 - SM_b20529 0.33 -0.3 553,881 + SM_b20529 0.47 -2.1 553,882 - SM_b20529 0.47 -0.2 553,928 + SM_b20529 0.52 +0.1 553,928 + SM_b20529 0.52 -0.6 553,928 + +0.2 553,972 + SM_b20529 0.57 -0.1 553,972 + SM_b20529 0.57 +0.3 553,972 + SM_b20529 0.57 -0.1 553,973 - SM_b20529 0.57 +0.2 553,974 + SM_b20529 0.57 -0.3 553,975 - SM_b20529 0.57 +0.3 553,975 - SM_b20529 0.57 -1.6 553,975 - SM_b20529 0.57 +0.1 554,001 + SM_b20529 0.60 -0.1 554,001 + SM_b20529 0.60 -0.5 554,001 + SM_b20529 0.60 +0.0 554,120 - SM_b20529 0.73 -0.1 554,151 + SM_b20529 0.76 -0.1 554,152 - SM_b20529 0.76 +0.4 554,205 + SM_b20529 0.82 +1.2 554,205 + SM_b20529 0.82 +0.4 554,205 + SM_b20529 0.82 +0.4 554,206 - SM_b20529 0.82 +1.3 554,206 - SM_b20529 0.82 -0.3 554,517 - SM_b20530 0.32 -0.1 554,595 - SM_b20530 0.55 -1.1 554,595 - SM_b20530 0.55 -0.8 554,595 - SM_b20530 0.55 -0.1 554,595 - SM_b20530 0.55 -1.5 554,595 - SM_b20530 0.55 +0.2 554,809 + +0.4 554,809 + -0.6 554,810 - +0.7 554,810 - +0.4 554,823 - -2.0 554,877 - +0.1 554,940 + -0.6 554,940 + +0.9 554,940 + -0.1 554,940 + -1.2 554,940 + +0.1 554,941 - +0.4 554,941 - +0.3 554,941 - +0.3 554,941 - -1.2 554,941 - +0.1 555,050 - SM_b20531 0.13 +1.8 555,050 - SM_b20531 0.13 +1.3 555,167 + SM_b20531 0.35 +0.6 555,167 + SM_b20531 0.35 +0.1 555,168 - SM_b20531 0.35 -0.8 555,168 - SM_b20531 0.35 +0.3 555,177 + SM_b20531 0.37 -0.1 555,177 + SM_b20531 0.37 -0.2 555,177 + SM_b20531 0.37 -0.3 555,177 + SM_b20531 0.37 -0.1 555,177 + SM_b20531 0.37 +1.2 555,178 - SM_b20531 0.37 +0.1 555,249 - SM_b20531 0.50 -0.1 555,249 - SM_b20531 0.50 +0.1 555,393 + SM_b20531 0.77 +0.3 555,394 - SM_b20531 0.77 -0.4 555,394 - SM_b20531 0.77 +0.3 555,394 - SM_b20531 0.77 +1.5 555,394 - SM_b20531 0.77 -1.0 555,394 - SM_b20531 0.77 +0.5 555,394 - SM_b20531 0.77 +0.1 555,394 - SM_b20531 0.77 -0.1 555,395 + SM_b20531 0.77 +0.3 555,643 - SM_b20532 0.20 +0.3 555,664 + SM_b20532 0.23 +0.9 555,667 + SM_b20532 0.23 -0.2
Or see this region's nucleotide sequence