Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20462 and SM_b20463 overlap by 1 nucleotides SM_b20463 and SM_b20464 are separated by 188 nucleotides SM_b20464 and SM_b20465 are separated by 165 nucleotides
SM_b20462: SM_b20462 - cellulase H protein, at 474,922 to 475,899
_b20462
SM_b20463: SM_b20463 - hypothetical protein, at 475,899 to 476,408
_b20463
SM_b20464: SM_b20464 - hypothetical protein, at 476,597 to 476,899
_b20464
SM_b20465: SM_b20465 - hypothetical protein, at 477,065 to 478,135
_b20465
Position (kb) 476
477 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 475.723 kb on + strand, within SM_b20462 at 475.723 kb on + strand, within SM_b20462 at 475.723 kb on + strand, within SM_b20462 at 475.724 kb on - strand, within SM_b20462 at 475.724 kb on - strand, within SM_b20462 at 475.724 kb on - strand, within SM_b20462 at 475.724 kb on - strand, within SM_b20462 at 475.724 kb on - strand, within SM_b20462 at 475.724 kb on - strand, within SM_b20462 at 475.813 kb on + strand at 475.863 kb on + strand at 475.911 kb on + strand at 475.911 kb on + strand at 475.912 kb on - strand at 475.921 kb on + strand at 475.921 kb on + strand at 475.952 kb on - strand, within SM_b20463 at 476.029 kb on - strand, within SM_b20463 at 476.037 kb on + strand, within SM_b20463 at 476.136 kb on + strand, within SM_b20463 at 476.176 kb on + strand, within SM_b20463 at 476.176 kb on + strand, within SM_b20463 at 476.176 kb on + strand, within SM_b20463 at 476.263 kb on - strand, within SM_b20463 at 476.292 kb on + strand, within SM_b20463 at 476.293 kb on - strand, within SM_b20463 at 476.293 kb on - strand, within SM_b20463 at 476.355 kb on + strand, within SM_b20463 at 476.355 kb on + strand, within SM_b20463 at 476.355 kb on + strand, within SM_b20463 at 476.356 kb on - strand, within SM_b20463 at 476.356 kb on - strand, within SM_b20463 at 476.356 kb on - strand, within SM_b20463 at 476.509 kb on + strand at 476.510 kb on - strand at 476.510 kb on - strand at 476.510 kb on - strand at 476.598 kb on + strand at 476.599 kb on - strand at 476.648 kb on - strand, within SM_b20464 at 476.649 kb on + strand, within SM_b20464 at 476.650 kb on - strand, within SM_b20464 at 476.650 kb on - strand, within SM_b20464 at 476.650 kb on - strand, within SM_b20464 at 476.650 kb on - strand, within SM_b20464 at 476.650 kb on - strand, within SM_b20464 at 477.155 kb on + strand at 477.156 kb on - strand at 477.156 kb on - strand at 477.239 kb on - strand, within SM_b20465 at 477.239 kb on - strand, within SM_b20465 at 477.392 kb on + strand, within SM_b20465 at 477.393 kb on - strand, within SM_b20465 at 477.394 kb on + strand, within SM_b20465 at 477.395 kb on - strand, within SM_b20465 at 477.530 kb on + strand, within SM_b20465 at 477.531 kb on - strand, within SM_b20465 at 477.626 kb on - strand, within SM_b20465 at 477.626 kb on - strand, within SM_b20465 at 477.692 kb on + strand, within SM_b20465 at 477.692 kb on + strand, within SM_b20465 at 477.692 kb on + strand, within SM_b20465 at 477.693 kb on - strand, within SM_b20465 at 477.725 kb on + strand, within SM_b20465 at 477.726 kb on - strand, within SM_b20465 at 477.726 kb on - strand, within SM_b20465 at 477.769 kb on + strand, within SM_b20465 at 477.770 kb on - strand, within SM_b20465
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 475,723 + SM_b20462 0.82 -0.1 475,723 + SM_b20462 0.82 +0.3 475,723 + SM_b20462 0.82 +0.2 475,724 - SM_b20462 0.82 -0.7 475,724 - SM_b20462 0.82 +0.2 475,724 - SM_b20462 0.82 -0.6 475,724 - SM_b20462 0.82 +0.7 475,724 - SM_b20462 0.82 -0.3 475,724 - SM_b20462 0.82 +0.0 475,813 + +0.5 475,863 + -0.1 475,911 + +0.5 475,911 + +0.7 475,912 - -0.8 475,921 + -0.1 475,921 + +0.0 475,952 - SM_b20463 0.10 +0.1 476,029 - SM_b20463 0.25 +1.7 476,037 + SM_b20463 0.27 -0.1 476,136 + SM_b20463 0.46 +0.7 476,176 + SM_b20463 0.54 -0.1 476,176 + SM_b20463 0.54 +1.2 476,176 + SM_b20463 0.54 +0.2 476,263 - SM_b20463 0.71 +0.1 476,292 + SM_b20463 0.77 -0.5 476,293 - SM_b20463 0.77 -0.2 476,293 - SM_b20463 0.77 +0.1 476,355 + SM_b20463 0.89 -0.3 476,355 + SM_b20463 0.89 -0.1 476,355 + SM_b20463 0.89 +1.0 476,356 - SM_b20463 0.90 -0.1 476,356 - SM_b20463 0.90 -3.4 476,356 - SM_b20463 0.90 +1.0 476,509 + +1.8 476,510 - -2.0 476,510 - +0.3 476,510 - -0.3 476,598 + -0.2 476,599 - +0.4 476,648 - SM_b20464 0.17 +0.1 476,649 + SM_b20464 0.17 -0.3 476,650 - SM_b20464 0.17 -0.3 476,650 - SM_b20464 0.17 -1.1 476,650 - SM_b20464 0.17 -0.1 476,650 - SM_b20464 0.17 -0.4 476,650 - SM_b20464 0.17 -1.2 477,155 + +1.1 477,156 - +0.1 477,156 - +0.3 477,239 - SM_b20465 0.16 -0.2 477,239 - SM_b20465 0.16 +0.0 477,392 + SM_b20465 0.31 +0.4 477,393 - SM_b20465 0.31 +0.1 477,394 + SM_b20465 0.31 -0.7 477,395 - SM_b20465 0.31 -0.3 477,530 + SM_b20465 0.43 +0.0 477,531 - SM_b20465 0.44 +0.5 477,626 - SM_b20465 0.52 -0.0 477,626 - SM_b20465 0.52 -0.0 477,692 + SM_b20465 0.59 -0.1 477,692 + SM_b20465 0.59 +0.4 477,692 + SM_b20465 0.59 -0.7 477,693 - SM_b20465 0.59 +0.3 477,725 + SM_b20465 0.62 +0.4 477,726 - SM_b20465 0.62 -1.0 477,726 - SM_b20465 0.62 -0.4 477,769 + SM_b20465 0.66 -0.0 477,770 - SM_b20465 0.66 +0.3
Or see this region's nucleotide sequence