Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20321 and SM_b20322 overlap by 1 nucleotides SM_b20322 and SM_b20323 are separated by 87 nucleotides SM_b20323 and SM_b20324 are separated by 21 nucleotides
SM_b20321: SM_b20321 - hypothetical protein, at 323,964 to 325,229
_b20321
SM_b20322: SM_b20322 - TRAP-type small permease component, at 325,229 to 325,834
_b20322
SM_b20323: SM_b20323 - transcriptional regulator, at 325,922 to 326,581
_b20323
SM_b20324: SM_b20324 - ThuR, regulatory protein for trehalosemaltose transport system, at 326,603 to 327,619
_b20324
Position (kb) 325
326 Strain fitness (log2 ratio) -2
-1
0
1
2 at 324.355 kb on + strand, within SM_b20321 at 324.415 kb on + strand, within SM_b20321 at 324.416 kb on - strand, within SM_b20321 at 324.603 kb on - strand, within SM_b20321 at 324.603 kb on - strand, within SM_b20321 at 324.643 kb on + strand, within SM_b20321 at 324.649 kb on + strand, within SM_b20321 at 324.649 kb on + strand, within SM_b20321 at 324.650 kb on - strand, within SM_b20321 at 324.688 kb on - strand, within SM_b20321 at 324.728 kb on + strand, within SM_b20321 at 324.728 kb on + strand, within SM_b20321 at 324.729 kb on - strand, within SM_b20321 at 324.753 kb on + strand, within SM_b20321 at 324.761 kb on - strand, within SM_b20321 at 324.844 kb on + strand, within SM_b20321 at 324.844 kb on + strand, within SM_b20321 at 324.915 kb on + strand, within SM_b20321 at 324.952 kb on + strand, within SM_b20321 at 324.952 kb on + strand, within SM_b20321 at 324.952 kb on + strand at 324.952 kb on + strand, within SM_b20321 at 324.953 kb on - strand, within SM_b20321 at 325.075 kb on + strand, within SM_b20321 at 325.147 kb on + strand at 325.147 kb on + strand at 325.148 kb on - strand at 325.397 kb on - strand, within SM_b20322 at 325.398 kb on + strand, within SM_b20322 at 325.566 kb on + strand, within SM_b20322 at 325.651 kb on - strand, within SM_b20322 at 325.652 kb on + strand, within SM_b20322 at 325.652 kb on + strand, within SM_b20322 at 325.652 kb on + strand, within SM_b20322 at 325.911 kb on - strand at 326.409 kb on - strand, within SM_b20323 at 326.641 kb on + strand at 326.642 kb on - strand at 326.642 kb on - strand at 326.642 kb on - strand at 326.787 kb on + strand, within SM_b20324 at 326.787 kb on + strand, within SM_b20324 at 326.787 kb on + strand, within SM_b20324 at 326.807 kb on + strand, within SM_b20324
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 324,355 + SM_b20321 0.31 -0.2 324,415 + SM_b20321 0.36 -0.4 324,416 - SM_b20321 0.36 -0.6 324,603 - SM_b20321 0.50 -0.2 324,603 - SM_b20321 0.50 -0.6 324,643 + SM_b20321 0.54 -0.5 324,649 + SM_b20321 0.54 -0.9 324,649 + SM_b20321 0.54 +1.3 324,650 - SM_b20321 0.54 +0.4 324,688 - SM_b20321 0.57 -1.1 324,728 + SM_b20321 0.60 -1.1 324,728 + SM_b20321 0.60 -0.1 324,729 - SM_b20321 0.60 -0.5 324,753 + SM_b20321 0.62 +0.0 324,761 - SM_b20321 0.63 +2.3 324,844 + SM_b20321 0.70 -0.5 324,844 + SM_b20321 0.70 +0.8 324,915 + SM_b20321 0.75 +0.2 324,952 + SM_b20321 0.78 -0.7 324,952 + SM_b20321 0.78 +0.0 324,952 + -0.3 324,952 + SM_b20321 0.78 -1.1 324,953 - SM_b20321 0.78 -0.3 325,075 + SM_b20321 0.88 +0.3 325,147 + -1.0 325,147 + -1.6 325,148 - +0.4 325,397 - SM_b20322 0.28 +0.2 325,398 + SM_b20322 0.28 -0.3 325,566 + SM_b20322 0.56 -1.0 325,651 - SM_b20322 0.70 -0.7 325,652 + SM_b20322 0.70 -1.8 325,652 + SM_b20322 0.70 -0.2 325,652 + SM_b20322 0.70 -1.1 325,911 - -0.0 326,409 - SM_b20323 0.74 -0.4 326,641 + -0.4 326,642 - +0.2 326,642 - +0.2 326,642 - +0.0 326,787 + SM_b20324 0.18 -0.1 326,787 + SM_b20324 0.18 +0.6 326,787 + SM_b20324 0.18 +0.4 326,807 + SM_b20324 0.20 -0.4
Or see this region's nucleotide sequence