Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20269

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20268 and SM_b20269 overlap by 4 nucleotidesSM_b20269 and SM_b20270 are separated by 50 nucleotides SM_b20268: SM_b20268 - hydroxyproline-2-epimerase, at 272,694 to 273,695 _b20268 SM_b20269: SM_b20269 - hypothetical protein, at 273,692 to 275,383 _b20269 SM_b20270: SM_b20270 - proline racemase, at 275,434 to 276,462 _b20270 Position (kb) 273 274 275 276Strain fitness (log2 ratio) -2 -1 0 1at 272.936 kb on - strand, within SM_b20268at 273.075 kb on + strand, within SM_b20268at 273.075 kb on + strand, within SM_b20268at 273.076 kb on - strand, within SM_b20268at 273.076 kb on - strand, within SM_b20268at 273.196 kb on - strand, within SM_b20268at 273.257 kb on + strand, within SM_b20268at 273.750 kb on + strandat 274.293 kb on - strand, within SM_b20269at 274.293 kb on - strand, within SM_b20269at 274.293 kb on - strand, within SM_b20269at 274.293 kb on - strand, within SM_b20269at 274.293 kb on - strand, within SM_b20269at 274.457 kb on + strand, within SM_b20269at 274.457 kb on + strand, within SM_b20269at 274.696 kb on - strand, within SM_b20269at 274.696 kb on - strand, within SM_b20269at 275.007 kb on + strand, within SM_b20269at 275.233 kb on + strandat 275.264 kb on + strandat 275.264 kb on + strandat 275.264 kb on + strandat 275.265 kb on - strandat 275.265 kb on - strandat 275.265 kb on - strandat 275.302 kb on - strandat 275.302 kb on - strandat 275.689 kb on - strand, within SM_b20270at 275.847 kb on + strand, within SM_b20270at 275.848 kb on - strand, within SM_b20270at 275.848 kb on - strand, within SM_b20270at 276.378 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
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272,936 - SM_b20268 0.24 +0.3
273,075 + SM_b20268 0.38 -0.1
273,075 + SM_b20268 0.38 +0.6
273,076 - SM_b20268 0.38 -1.2
273,076 - SM_b20268 0.38 +0.1
273,196 - SM_b20268 0.50 +0.1
273,257 + SM_b20268 0.56 -0.2
273,750 + -0.4
274,293 - SM_b20269 0.36 +0.9
274,293 - SM_b20269 0.36 -0.4
274,293 - SM_b20269 0.36 +0.2
274,293 - SM_b20269 0.36 -0.4
274,293 - SM_b20269 0.36 +0.9
274,457 + SM_b20269 0.45 +0.8
274,457 + SM_b20269 0.45 +0.5
274,696 - SM_b20269 0.59 -0.1
274,696 - SM_b20269 0.59 +0.8
275,007 + SM_b20269 0.78 +0.6
275,233 + +1.6
275,264 + -0.5
275,264 + -2.0
275,264 + -0.4
275,265 - +0.3
275,265 - -1.7
275,265 - -0.3
275,302 - +0.4
275,302 - +0.2
275,689 - SM_b20270 0.25 +0.1
275,847 + SM_b20270 0.40 -1.5
275,848 - SM_b20270 0.40 +0.8
275,848 - SM_b20270 0.40 +0.1
276,378 + +0.1

Or see this region's nucleotide sequence