Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20091 and SM_b20092 are separated by 85 nucleotides SM_b20092 and SM_b20093 are separated by 37 nucleotides SM_b20093 and SM_b20094 overlap by 106 nucleotides
SM_b20091: SM_b20091 - hypothetical protein, at 99,186 to 99,692
_b20091
SM_b20092: SM_b20092 - hypothetical protein, at 99,778 to 100,536
_b20092
SM_b20093: SM_b20093 - hypothetical protein, at 100,574 to 101,515
_b20093
SM_b20094: SM_b20094 - phospholipase, at 101,410 to 103,182
_b20094
Position (kb) 100
101
102 Strain fitness (log2 ratio) -2
-1
0
1
2 at 99.779 kb on + strand at 99.780 kb on - strand at 99.780 kb on - strand at 99.780 kb on - strand at 99.880 kb on + strand, within SM_b20092 at 99.880 kb on + strand, within SM_b20092 at 99.881 kb on - strand, within SM_b20092 at 99.881 kb on - strand, within SM_b20092 at 100.001 kb on + strand, within SM_b20092 at 100.002 kb on - strand, within SM_b20092 at 100.274 kb on + strand, within SM_b20092 at 100.325 kb on - strand, within SM_b20092 at 100.342 kb on - strand, within SM_b20092 at 100.354 kb on + strand at 100.354 kb on + strand, within SM_b20092 at 100.487 kb on + strand at 100.641 kb on - strand at 100.661 kb on - strand at 100.742 kb on + strand, within SM_b20093 at 100.742 kb on + strand, within SM_b20093 at 100.743 kb on - strand, within SM_b20093 at 101.094 kb on - strand, within SM_b20093 at 101.282 kb on + strand, within SM_b20093 at 101.282 kb on + strand, within SM_b20093 at 101.283 kb on - strand, within SM_b20093 at 101.283 kb on - strand, within SM_b20093 at 101.283 kb on - strand, within SM_b20093 at 101.411 kb on + strand at 101.641 kb on + strand, within SM_b20094 at 101.907 kb on + strand, within SM_b20094 at 102.140 kb on + strand, within SM_b20094 at 102.140 kb on + strand, within SM_b20094 at 102.155 kb on + strand, within SM_b20094 at 102.155 kb on + strand, within SM_b20094 at 102.155 kb on + strand, within SM_b20094 at 102.156 kb on - strand, within SM_b20094 at 102.156 kb on - strand, within SM_b20094 at 102.339 kb on + strand, within SM_b20094
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 99,779 + +0.1 99,780 - -0.7 99,780 - -0.6 99,780 - +0.5 99,880 + SM_b20092 0.13 +2.3 99,880 + SM_b20092 0.13 +1.0 99,881 - SM_b20092 0.14 +0.7 99,881 - SM_b20092 0.14 -0.1 100,001 + SM_b20092 0.29 -0.0 100,002 - SM_b20092 0.30 +0.0 100,274 + SM_b20092 0.65 +0.3 100,325 - SM_b20092 0.72 -1.3 100,342 - SM_b20092 0.74 +0.4 100,354 + +0.3 100,354 + SM_b20092 0.76 +0.5 100,487 + +0.4 100,641 - +0.2 100,661 - -0.2 100,742 + SM_b20093 0.18 -1.0 100,742 + SM_b20093 0.18 -0.9 100,743 - SM_b20093 0.18 -0.7 101,094 - SM_b20093 0.55 -0.4 101,282 + SM_b20093 0.75 +0.4 101,282 + SM_b20093 0.75 -0.3 101,283 - SM_b20093 0.75 -1.8 101,283 - SM_b20093 0.75 -0.5 101,283 - SM_b20093 0.75 -2.5 101,411 + +0.4 101,641 + SM_b20094 0.13 -0.2 101,907 + SM_b20094 0.28 -0.3 102,140 + SM_b20094 0.41 +1.5 102,140 + SM_b20094 0.41 -0.7 102,155 + SM_b20094 0.42 +0.8 102,155 + SM_b20094 0.42 +0.3 102,155 + SM_b20094 0.42 +0.5 102,156 - SM_b20094 0.42 +0.6 102,156 - SM_b20094 0.42 -1.2 102,339 + SM_b20094 0.52 -2.3
Or see this region's nucleotide sequence