Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20079 and SM_b20080 are separated by 114 nucleotides SM_b20080 and SM_b20081 are separated by 19 nucleotides SM_b20081 and SM_b20082 overlap by 4 nucleotides
SM_b20079: SM_b20079 - hemolysin-adenlyate cyclase, at 88,213 to 91,431
_b20079
SM_b20080: SM_b20080 - alcohol dehydrogenase, at 91,546 to 92,715
_b20080
SM_b20081: SM_b20081 - hypothetical protein, at 92,735 to 93,445
_b20081
SM_b20082: SM_b20082 - hypothetical protein, at 93,442 to 94,260
_b20082
Position (kb) 91
92
93 Strain fitness (log2 ratio) -1
0
1
2 at 90.546 kb on + strand, within SM_b20079 at 90.547 kb on - strand, within SM_b20079 at 90.597 kb on + strand, within SM_b20079 at 90.597 kb on + strand, within SM_b20079 at 90.597 kb on + strand, within SM_b20079 at 90.598 kb on - strand, within SM_b20079 at 90.789 kb on + strand, within SM_b20079 at 90.789 kb on + strand, within SM_b20079 at 90.789 kb on + strand, within SM_b20079 at 90.790 kb on - strand, within SM_b20079 at 90.907 kb on + strand, within SM_b20079 at 90.955 kb on + strand, within SM_b20079 at 90.956 kb on - strand, within SM_b20079 at 90.956 kb on - strand, within SM_b20079 at 90.956 kb on - strand, within SM_b20079 at 90.957 kb on + strand, within SM_b20079 at 90.957 kb on + strand, within SM_b20079 at 90.958 kb on - strand, within SM_b20079 at 90.958 kb on - strand, within SM_b20079 at 91.252 kb on + strand at 91.253 kb on - strand at 91.253 kb on - strand at 91.303 kb on + strand at 91.327 kb on + strand at 91.327 kb on + strand at 91.328 kb on - strand at 91.331 kb on - strand at 91.674 kb on + strand, within SM_b20080 at 91.951 kb on - strand, within SM_b20080 at 91.951 kb on - strand, within SM_b20080 at 91.970 kb on - strand, within SM_b20080 at 92.251 kb on + strand, within SM_b20080 at 92.252 kb on - strand, within SM_b20080 at 92.252 kb on - strand, within SM_b20080 at 92.269 kb on + strand, within SM_b20080 at 92.269 kb on + strand, within SM_b20080 at 92.499 kb on - strand, within SM_b20080 at 92.563 kb on + strand, within SM_b20080 at 92.563 kb on + strand, within SM_b20080 at 92.659 kb on + strand at 92.829 kb on + strand, within SM_b20081 at 92.830 kb on - strand, within SM_b20081 at 93.089 kb on - strand, within SM_b20081 at 93.089 kb on - strand, within SM_b20081 at 93.089 kb on - strand, within SM_b20081 at 93.379 kb on + strand at 93.382 kb on - strand at 93.382 kb on - strand at 93.382 kb on - strand at 93.404 kb on + strand at 93.404 kb on + strand at 93.404 kb on + strand at 93.404 kb on + strand at 93.405 kb on - strand at 93.454 kb on - strand at 93.542 kb on + strand, within SM_b20082 at 93.543 kb on - strand, within SM_b20082 at 93.713 kb on + strand, within SM_b20082 at 93.713 kb on + strand, within SM_b20082
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 90,546 + SM_b20079 0.72 -0.4 90,547 - SM_b20079 0.73 -0.3 90,597 + SM_b20079 0.74 +0.0 90,597 + SM_b20079 0.74 +0.4 90,597 + SM_b20079 0.74 +0.4 90,598 - SM_b20079 0.74 -0.0 90,789 + SM_b20079 0.80 +0.0 90,789 + SM_b20079 0.80 -0.1 90,789 + SM_b20079 0.80 +0.1 90,790 - SM_b20079 0.80 -0.3 90,907 + SM_b20079 0.84 -0.0 90,955 + SM_b20079 0.85 +0.2 90,956 - SM_b20079 0.85 -0.2 90,956 - SM_b20079 0.85 +0.9 90,956 - SM_b20079 0.85 -0.4 90,957 + SM_b20079 0.85 -1.0 90,957 + SM_b20079 0.85 +1.1 90,958 - SM_b20079 0.85 +0.9 90,958 - SM_b20079 0.85 -0.0 91,252 + +0.5 91,253 - -0.3 91,253 - +0.1 91,303 + +0.5 91,327 + -0.0 91,327 + -0.6 91,328 - +2.0 91,331 - -0.1 91,674 + SM_b20080 0.11 -0.0 91,951 - SM_b20080 0.35 +0.7 91,951 - SM_b20080 0.35 +0.4 91,970 - SM_b20080 0.36 +0.9 92,251 + SM_b20080 0.60 +0.6 92,252 - SM_b20080 0.60 +1.0 92,252 - SM_b20080 0.60 -1.6 92,269 + SM_b20080 0.62 +0.3 92,269 + SM_b20080 0.62 -0.1 92,499 - SM_b20080 0.81 +1.9 92,563 + SM_b20080 0.87 +0.2 92,563 + SM_b20080 0.87 +0.1 92,659 + -0.7 92,829 + SM_b20081 0.13 -0.3 92,830 - SM_b20081 0.13 -0.1 93,089 - SM_b20081 0.50 -0.4 93,089 - SM_b20081 0.50 -1.3 93,089 - SM_b20081 0.50 +1.1 93,379 + -0.1 93,382 - +0.8 93,382 - +0.2 93,382 - +0.3 93,404 + +1.9 93,404 + -0.4 93,404 + -0.6 93,404 + -0.1 93,405 - -0.6 93,454 - +0.4 93,542 + SM_b20082 0.12 +0.2 93,543 - SM_b20082 0.12 -0.3 93,713 + SM_b20082 0.33 -0.5 93,713 + SM_b20082 0.33 +0.8
Or see this region's nucleotide sequence