Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20041

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20040 and SM_b20041 are separated by 190 nucleotidesSM_b20041 and SM_b20042 are separated by 22 nucleotides SM_b20040: SM_b20040 - hypothetical protein, at 50,652 to 51,512 _b20040 SM_b20041: SM_b20041 - hypothetical protein, at 51,703 to 52,233 _b20041 SM_b20042: SM_b20042 - hypothetical protein, at 52,256 to 53,413 _b20042 Position (kb) 51 52 53Strain fitness (log2 ratio) -2 -1 0 1at 50.753 kb on + strand, within SM_b20040at 50.754 kb on - strand, within SM_b20040at 50.898 kb on - strand, within SM_b20040at 51.136 kb on + strand, within SM_b20040at 51.696 kb on + strandat 51.696 kb on + strandat 51.696 kb on + strandat 51.697 kb on - strandat 51.720 kb on - strandat 51.770 kb on + strand, within SM_b20041at 51.925 kb on - strand, within SM_b20041at 52.002 kb on + strand, within SM_b20041at 52.012 kb on + strand, within SM_b20041at 52.012 kb on + strand, within SM_b20041at 52.012 kb on + strand, within SM_b20041at 52.013 kb on - strand, within SM_b20041at 52.165 kb on - strand, within SM_b20041at 52.165 kb on - strand, within SM_b20041at 52.606 kb on - strand, within SM_b20042at 52.700 kb on - strand, within SM_b20042at 52.700 kb on - strand, within SM_b20042at 52.700 kb on - strand, within SM_b20042at 52.700 kb on - strand, within SM_b20042at 52.700 kb on - strand, within SM_b20042at 53.213 kb on + strand, within SM_b20042

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
remove
50,753 + SM_b20040 0.12 +1.0
50,754 - SM_b20040 0.12 -0.4
50,898 - SM_b20040 0.29 -0.8
51,136 + SM_b20040 0.56 +0.5
51,696 + +0.1
51,696 + +0.5
51,696 + -1.0
51,697 - -0.4
51,720 - -0.5
51,770 + SM_b20041 0.13 +0.0
51,925 - SM_b20041 0.42 -0.1
52,002 + SM_b20041 0.56 -0.2
52,012 + SM_b20041 0.58 +0.5
52,012 + SM_b20041 0.58 +0.1
52,012 + SM_b20041 0.58 +0.1
52,013 - SM_b20041 0.58 -2.3
52,165 - SM_b20041 0.87 +0.1
52,165 - SM_b20041 0.87 -0.4
52,606 - SM_b20042 0.30 +1.1
52,700 - SM_b20042 0.38 +1.3
52,700 - SM_b20042 0.38 +0.6
52,700 - SM_b20042 0.38 -0.4
52,700 - SM_b20042 0.38 +0.1
52,700 - SM_b20042 0.38 -0.0
53,213 + SM_b20042 0.83 -1.3

Or see this region's nucleotide sequence