Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21655 and SM_b20002 overlap by 4 nucleotides SM_b20002 and SM_b20003 are separated by 58 nucleotides SM_b20003 and SM_b20004 are separated by 6 nucleotides
SM_b21655: SM_b21655 - Beta-galactosidase (EC 3.2.1.23) <small>(from data)</small>, at 3,086 to 5,353
_b21655
SM_b20002: SM_b20002 - ABC transporter for Lactose, ATPase component <small>(from data)</small>, at 5,350 to 6,426
_b20002
SM_b20003: SM_b20003 - pyrroline-5-carboxylate reductase, at 6,485 to 7,261
_b20003
SM_b20004: SM_b20004 - gstR-like transcriptional regulator protein, at 7,268 to 8,173
_b20004
Position (kb) 5
6
7 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4.460 kb on + strand, within SM_b21655 at 4.490 kb on + strand, within SM_b21655 at 4.491 kb on - strand, within SM_b21655 at 4.505 kb on + strand, within SM_b21655 at 4.568 kb on + strand, within SM_b21655 at 4.616 kb on + strand, within SM_b21655 at 4.617 kb on - strand, within SM_b21655 at 4.658 kb on + strand, within SM_b21655 at 4.658 kb on + strand, within SM_b21655 at 4.703 kb on + strand, within SM_b21655 at 4.703 kb on + strand, within SM_b21655 at 4.703 kb on + strand, within SM_b21655 at 4.703 kb on + strand, within SM_b21655 at 4.703 kb on + strand, within SM_b21655 at 4.703 kb on + strand, within SM_b21655 at 4.704 kb on - strand at 4.704 kb on - strand, within SM_b21655 at 4.704 kb on - strand, within SM_b21655 at 4.704 kb on - strand, within SM_b21655 at 4.710 kb on - strand, within SM_b21655 at 4.842 kb on - strand, within SM_b21655 at 5.041 kb on + strand, within SM_b21655 at 5.041 kb on + strand, within SM_b21655 at 5.042 kb on - strand, within SM_b21655 at 5.380 kb on - strand at 5.380 kb on - strand at 5.426 kb on + strand at 5.426 kb on + strand at 5.427 kb on - strand at 5.599 kb on + strand, within SM_b20002 at 5.599 kb on + strand, within SM_b20002 at 5.599 kb on + strand, within SM_b20002 at 5.608 kb on + strand, within SM_b20002 at 5.608 kb on + strand, within SM_b20002 at 5.616 kb on + strand, within SM_b20002 at 5.617 kb on - strand, within SM_b20002 at 5.617 kb on - strand, within SM_b20002 at 5.635 kb on - strand, within SM_b20002 at 5.635 kb on - strand, within SM_b20002 at 5.706 kb on + strand, within SM_b20002 at 5.863 kb on - strand, within SM_b20002 at 5.914 kb on + strand, within SM_b20002 at 5.915 kb on - strand, within SM_b20002 at 6.013 kb on + strand, within SM_b20002 at 6.014 kb on - strand, within SM_b20002 at 6.281 kb on - strand, within SM_b20002 at 6.448 kb on + strand at 6.448 kb on + strand at 6.449 kb on - strand at 6.449 kb on - strand at 6.449 kb on - strand at 6.449 kb on - strand at 6.490 kb on + strand at 6.947 kb on + strand, within SM_b20003 at 6.948 kb on - strand, within SM_b20003 at 6.986 kb on + strand, within SM_b20003 at 6.986 kb on + strand, within SM_b20003 at 6.987 kb on - strand, within SM_b20003 at 7.059 kb on - strand, within SM_b20003 at 7.059 kb on - strand, within SM_b20003
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 4,460 + SM_b21655 0.61 +0.2 4,490 + SM_b21655 0.62 +0.2 4,491 - SM_b21655 0.62 +0.3 4,505 + SM_b21655 0.63 -0.7 4,568 + SM_b21655 0.65 -0.2 4,616 + SM_b21655 0.67 -0.6 4,617 - SM_b21655 0.68 +0.1 4,658 + SM_b21655 0.69 +1.3 4,658 + SM_b21655 0.69 -0.8 4,703 + SM_b21655 0.71 -0.2 4,703 + SM_b21655 0.71 -0.0 4,703 + SM_b21655 0.71 -0.0 4,703 + SM_b21655 0.71 -0.1 4,703 + SM_b21655 0.71 -0.1 4,703 + SM_b21655 0.71 -0.5 4,704 - -2.8 4,704 - SM_b21655 0.71 -0.0 4,704 - SM_b21655 0.71 +0.1 4,704 - SM_b21655 0.71 -0.0 4,710 - SM_b21655 0.72 -0.1 4,842 - SM_b21655 0.77 -0.4 5,041 + SM_b21655 0.86 +0.2 5,041 + SM_b21655 0.86 -0.3 5,042 - SM_b21655 0.86 +0.2 5,380 - -0.6 5,380 - -0.4 5,426 + -0.8 5,426 + -0.2 5,427 - -0.4 5,599 + SM_b20002 0.23 +0.7 5,599 + SM_b20002 0.23 -0.3 5,599 + SM_b20002 0.23 +0.1 5,608 + SM_b20002 0.24 -0.6 5,608 + SM_b20002 0.24 -0.5 5,616 + SM_b20002 0.25 -0.7 5,617 - SM_b20002 0.25 -0.4 5,617 - SM_b20002 0.25 -0.1 5,635 - SM_b20002 0.26 +4.1 5,635 - SM_b20002 0.26 +0.2 5,706 + SM_b20002 0.33 -0.9 5,863 - SM_b20002 0.48 -0.1 5,914 + SM_b20002 0.52 +0.0 5,915 - SM_b20002 0.52 +0.0 6,013 + SM_b20002 0.62 +0.3 6,014 - SM_b20002 0.62 -0.0 6,281 - SM_b20002 0.86 +0.1 6,448 + -0.2 6,448 + +1.4 6,449 - +0.4 6,449 - -1.0 6,449 - +0.4 6,449 - +0.8 6,490 + -0.1 6,947 + SM_b20003 0.59 +0.3 6,948 - SM_b20003 0.60 +1.3 6,986 + SM_b20003 0.64 +0.7 6,986 + SM_b20003 0.64 -0.2 6,987 - SM_b20003 0.65 +0.5 7,059 - SM_b20003 0.74 +0.7 7,059 - SM_b20003 0.74 +0.1
Or see this region's nucleotide sequence