Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0697

Experiment: Cobalt chloride 0.06 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0695 and Psest_0696 are separated by 34 nucleotidesPsest_0696 and Psest_0697 are separated by 21 nucleotidesPsest_0697 and Psest_0698 are separated by 103 nucleotides Psest_0695: Psest_0695 - ribosomal protein S18, at 760,181 to 760,411 _0695 Psest_0696: Psest_0696 - hypothetical protein, at 760,446 to 761,339 _0696 Psest_0697: Psest_0697 - ribosomal protein L9, at 761,361 to 761,807 _0697 Psest_0698: Psest_0698 - replicative DNA helicase, at 761,911 to 763,305 _0698 Position (kb) 761 762Strain fitness (log2 ratio) -2 -1 0 1 2at 760.729 kb on + strand, within Psest_0696at 760.729 kb on + strand, within Psest_0696at 760.729 kb on + strand, within Psest_0696at 760.730 kb on - strand, within Psest_0696at 760.755 kb on + strand, within Psest_0696at 760.755 kb on + strand, within Psest_0696at 760.755 kb on + strand, within Psest_0696at 760.755 kb on + strand, within Psest_0696at 760.755 kb on + strand, within Psest_0696at 760.755 kb on + strand, within Psest_0696at 760.755 kb on + strand, within Psest_0696at 760.755 kb on + strand, within Psest_0696at 760.755 kb on + strand, within Psest_0696at 760.755 kb on + strand, within Psest_0696at 760.756 kb on - strand, within Psest_0696at 760.986 kb on + strand, within Psest_0696at 760.987 kb on - strand, within Psest_0696at 761.131 kb on + strand, within Psest_0696at 761.205 kb on + strand, within Psest_0696at 761.205 kb on + strand, within Psest_0696at 761.205 kb on + strand, within Psest_0696at 761.205 kb on + strand, within Psest_0696at 761.206 kb on - strand, within Psest_0696at 761.543 kb on + strand, within Psest_0697at 761.740 kb on - strand, within Psest_0697at 761.746 kb on + strand, within Psest_0697at 761.746 kb on + strand, within Psest_0697at 761.746 kb on + strand, within Psest_0697at 761.746 kb on + strand, within Psest_0697at 761.746 kb on + strand, within Psest_0697at 761.746 kb on + strand, within Psest_0697at 761.747 kb on - strand, within Psest_0697at 761.890 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.06 mM
remove
760,729 + Psest_0696 0.32 -0.8
760,729 + Psest_0696 0.32 +2.4
760,729 + Psest_0696 0.32 +1.9
760,730 - Psest_0696 0.32 -1.6
760,755 + Psest_0696 0.35 +0.2
760,755 + Psest_0696 0.35 -0.5
760,755 + Psest_0696 0.35 -1.5
760,755 + Psest_0696 0.35 +2.4
760,755 + Psest_0696 0.35 -0.7
760,755 + Psest_0696 0.35 +2.0
760,755 + Psest_0696 0.35 -0.7
760,755 + Psest_0696 0.35 +0.9
760,755 + Psest_0696 0.35 -1.1
760,755 + Psest_0696 0.35 +0.0
760,756 - Psest_0696 0.35 +1.0
760,986 + Psest_0696 0.60 -1.1
760,987 - Psest_0696 0.61 -0.3
761,131 + Psest_0696 0.77 +2.0
761,205 + Psest_0696 0.85 -0.3
761,205 + Psest_0696 0.85 +2.0
761,205 + Psest_0696 0.85 +1.0
761,205 + Psest_0696 0.85 -0.2
761,206 - Psest_0696 0.85 +1.0
761,543 + Psest_0697 0.41 -1.5
761,740 - Psest_0697 0.85 -1.3
761,746 + Psest_0697 0.86 -1.1
761,746 + Psest_0697 0.86 -1.9
761,746 + Psest_0697 0.86 -0.6
761,746 + Psest_0697 0.86 -1.1
761,746 + Psest_0697 0.86 +0.3
761,746 + Psest_0697 0.86 -1.0
761,747 - Psest_0697 0.86 -2.1
761,890 + +0.4

Or see this region's nucleotide sequence