Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0344

Experiment: Cobalt chloride 0.06 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0343 and Psest_0344 are separated by 135 nucleotidesPsest_0344 and Psest_0345 are separated by 181 nucleotides Psest_0343: Psest_0343 - hypothetical membrane protein, TIGR01666, at 364,840 to 367,038 _0343 Psest_0344: Psest_0344 - Superfamily II DNA and RNA helicases, at 367,174 to 368,553 _0344 Psest_0345: Psest_0345 - Uncharacterized protein conserved in archaea, at 368,735 to 369,244 _0345 Position (kb) 367 368 369Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 366.205 kb on + strand, within Psest_0343at 366.205 kb on + strand, within Psest_0343at 366.205 kb on + strand, within Psest_0343at 366.205 kb on + strand, within Psest_0343at 366.205 kb on + strand, within Psest_0343at 366.205 kb on + strand, within Psest_0343at 366.205 kb on + strand, within Psest_0343at 366.205 kb on + strand, within Psest_0343at 366.205 kb on + strand, within Psest_0343at 366.206 kb on - strand, within Psest_0343at 366.206 kb on - strand, within Psest_0343at 366.206 kb on - strand, within Psest_0343at 366.206 kb on - strand, within Psest_0343at 366.206 kb on - strand, within Psest_0343at 366.206 kb on - strand, within Psest_0343at 366.206 kb on - strand, within Psest_0343at 366.206 kb on - strand, within Psest_0343at 366.243 kb on - strand, within Psest_0343at 366.293 kb on + strand, within Psest_0343at 366.293 kb on + strand, within Psest_0343at 366.293 kb on + strand, within Psest_0343at 366.293 kb on + strand, within Psest_0343at 366.294 kb on - strand, within Psest_0343at 366.305 kb on + strand, within Psest_0343at 366.305 kb on + strand, within Psest_0343at 366.467 kb on + strand, within Psest_0343at 366.468 kb on - strand, within Psest_0343at 366.476 kb on + strand, within Psest_0343at 366.476 kb on + strand, within Psest_0343at 366.477 kb on - strand, within Psest_0343at 366.653 kb on + strand, within Psest_0343at 366.653 kb on + strand, within Psest_0343at 366.653 kb on + strand, within Psest_0343at 366.653 kb on + strand, within Psest_0343at 366.653 kb on + strand, within Psest_0343at 366.653 kb on + strand, within Psest_0343at 366.653 kb on + strand, within Psest_0343at 366.653 kb on + strand, within Psest_0343at 366.653 kb on + strand, within Psest_0343at 366.653 kb on + strand, within Psest_0343at 366.653 kb on + strand, within Psest_0343at 366.653 kb on + strand, within Psest_0343at 366.653 kb on + strand, within Psest_0343at 366.653 kb on + strand, within Psest_0343at 366.653 kb on + strand, within Psest_0343at 366.654 kb on - strand, within Psest_0343at 366.654 kb on - strand, within Psest_0343at 366.654 kb on - strand, within Psest_0343at 366.654 kb on - strand, within Psest_0343at 366.654 kb on - strand, within Psest_0343at 366.654 kb on - strand, within Psest_0343at 366.654 kb on - strand, within Psest_0343at 366.654 kb on - strand, within Psest_0343at 366.927 kb on - strandat 366.960 kb on + strandat 367.057 kb on - strandat 367.057 kb on - strandat 367.057 kb on - strandat 367.057 kb on - strandat 367.065 kb on + strandat 367.066 kb on - strandat 367.186 kb on + strandat 367.187 kb on - strandat 367.187 kb on - strandat 367.187 kb on - strandat 367.212 kb on + strandat 367.212 kb on + strandat 367.212 kb on + strandat 367.212 kb on + strandat 367.212 kb on + strandat 367.212 kb on + strandat 367.213 kb on - strandat 367.434 kb on + strand, within Psest_0344at 367.890 kb on - strand, within Psest_0344at 367.991 kb on + strand, within Psest_0344at 367.991 kb on + strand, within Psest_0344at 367.991 kb on + strand, within Psest_0344at 367.992 kb on - strand, within Psest_0344at 367.992 kb on - strand, within Psest_0344at 367.992 kb on - strand, within Psest_0344at 367.992 kb on - strand, within Psest_0344at 368.060 kb on + strand, within Psest_0344at 368.060 kb on + strand, within Psest_0344at 368.060 kb on + strand, within Psest_0344at 368.060 kb on + strand, within Psest_0344at 368.061 kb on - strand, within Psest_0344at 368.345 kb on + strand, within Psest_0344at 368.345 kb on + strand, within Psest_0344at 368.588 kb on + strandat 368.588 kb on + strandat 368.588 kb on + strandat 368.589 kb on - strandat 368.589 kb on - strandat 368.973 kb on + strand, within Psest_0345at 368.973 kb on + strand, within Psest_0345at 368.973 kb on + strand, within Psest_0345at 368.973 kb on + strand, within Psest_0345at 368.973 kb on + strand, within Psest_0345at 368.973 kb on + strand, within Psest_0345at 368.973 kb on + strand, within Psest_0345at 368.973 kb on + strand, within Psest_0345at 368.973 kb on + strand, within Psest_0345at 368.973 kb on + strand, within Psest_0345at 368.973 kb on + strand, within Psest_0345at 368.973 kb on + strand, within Psest_0345at 368.973 kb on + strand, within Psest_0345at 368.973 kb on + strand, within Psest_0345at 368.973 kb on + strand, within Psest_0345at 368.973 kb on + strand, within Psest_0345at 368.973 kb on + strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.974 kb on - strand, within Psest_0345at 368.975 kb on + strand, within Psest_0345at 368.975 kb on + strand, within Psest_0345at 368.975 kb on + strand, within Psest_0345at 368.975 kb on + strand, within Psest_0345at 368.975 kb on + strand, within Psest_0345at 368.976 kb on - strand, within Psest_0345at 368.976 kb on - strand, within Psest_0345at 368.976 kb on - strand, within Psest_0345at 368.976 kb on - strand, within Psest_0345at 368.976 kb on - strand, within Psest_0345at 368.976 kb on - strand, within Psest_0345at 368.976 kb on - strand, within Psest_0345at 368.976 kb on - strand, within Psest_0345at 368.976 kb on - strand, within Psest_0345at 368.976 kb on - strand, within Psest_0345at 368.976 kb on - strand, within Psest_0345at 369.152 kb on + strand, within Psest_0345at 369.153 kb on - strand, within Psest_0345at 369.203 kb on + strandat 369.203 kb on + strandat 369.203 kb on + strandat 369.203 kb on + strandat 369.204 kb on - strandat 369.204 kb on - strandat 369.204 kb on - strandat 369.218 kb on + strandat 369.219 kb on - strandat 369.219 kb on - strandat 369.516 kb on - strandat 369.525 kb on + strandat 369.528 kb on - strandat 369.528 kb on - strandat 369.528 kb on - strandat 369.528 kb on - strandat 369.536 kb on + strandat 369.553 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.06 mM
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366,205 + Psest_0343 0.62 +0.4
366,205 + Psest_0343 0.62 -0.5
366,205 + Psest_0343 0.62 -2.4
366,205 + Psest_0343 0.62 +0.7
366,205 + Psest_0343 0.62 +0.9
366,205 + Psest_0343 0.62 -3.0
366,205 + Psest_0343 0.62 +0.4
366,205 + Psest_0343 0.62 -0.3
366,205 + Psest_0343 0.62 -0.2
366,206 - Psest_0343 0.62 +1.2
366,206 - Psest_0343 0.62 +1.5
366,206 - Psest_0343 0.62 -0.5
366,206 - Psest_0343 0.62 -1.8
366,206 - Psest_0343 0.62 -0.9
366,206 - Psest_0343 0.62 -0.4
366,206 - Psest_0343 0.62 +0.2
366,206 - Psest_0343 0.62 +0.3
366,243 - Psest_0343 0.64 -1.4
366,293 + Psest_0343 0.66 -1.5
366,293 + Psest_0343 0.66 +0.4
366,293 + Psest_0343 0.66 -0.0
366,293 + Psest_0343 0.66 -0.8
366,294 - Psest_0343 0.66 -0.9
366,305 + Psest_0343 0.67 -1.7
366,305 + Psest_0343 0.67 -0.3
366,467 + Psest_0343 0.74 +0.9
366,468 - Psest_0343 0.74 +1.7
366,476 + Psest_0343 0.74 +1.9
366,476 + Psest_0343 0.74 -0.3
366,477 - Psest_0343 0.74 +2.2
366,653 + Psest_0343 0.82 +1.1
366,653 + Psest_0343 0.82 +2.0
366,653 + Psest_0343 0.82 -0.4
366,653 + Psest_0343 0.82 -0.9
366,653 + Psest_0343 0.82 -0.7
366,653 + Psest_0343 0.82 -0.5
366,653 + Psest_0343 0.82 +0.7
366,653 + Psest_0343 0.82 +0.9
366,653 + Psest_0343 0.82 -0.5
366,653 + Psest_0343 0.82 -0.7
366,653 + Psest_0343 0.82 -0.1
366,653 + Psest_0343 0.82 -1.8
366,653 + Psest_0343 0.82 -0.5
366,653 + Psest_0343 0.82 +0.8
366,653 + Psest_0343 0.82 +0.8
366,654 - Psest_0343 0.82 -0.7
366,654 - Psest_0343 0.82 -1.7
366,654 - Psest_0343 0.82 +0.8
366,654 - Psest_0343 0.82 +1.2
366,654 - Psest_0343 0.82 +1.4
366,654 - Psest_0343 0.82 -0.4
366,654 - Psest_0343 0.82 +0.7
366,654 - Psest_0343 0.82 -1.0
366,927 - +1.3
366,960 + -2.1
367,057 - -2.4
367,057 - -0.8
367,057 - +0.1
367,057 - -0.0
367,065 + +0.3
367,066 - +0.2
367,186 + -0.5
367,187 - +1.7
367,187 - +1.6
367,187 - -0.7
367,212 + +1.8
367,212 + -1.1
367,212 + -0.4
367,212 + -1.4
367,212 + -1.0
367,212 + -1.8
367,213 - +0.7
367,434 + Psest_0344 0.19 -0.4
367,890 - Psest_0344 0.52 -1.6
367,991 + Psest_0344 0.59 -1.0
367,991 + Psest_0344 0.59 -0.8
367,991 + Psest_0344 0.59 +0.1
367,992 - Psest_0344 0.59 -1.5
367,992 - Psest_0344 0.59 -1.9
367,992 - Psest_0344 0.59 -0.5
367,992 - Psest_0344 0.59 -1.1
368,060 + Psest_0344 0.64 -0.0
368,060 + Psest_0344 0.64 -1.4
368,060 + Psest_0344 0.64 +1.3
368,060 + Psest_0344 0.64 -0.8
368,061 - Psest_0344 0.64 -1.4
368,345 + Psest_0344 0.85 -0.9
368,345 + Psest_0344 0.85 -0.9
368,588 + -1.8
368,588 + -0.1
368,588 + +3.3
368,589 - +1.1
368,589 - +0.4
368,973 + Psest_0345 0.47 -0.8
368,973 + Psest_0345 0.47 +1.1
368,973 + Psest_0345 0.47 +1.1
368,973 + Psest_0345 0.47 +0.3
368,973 + Psest_0345 0.47 -1.0
368,973 + Psest_0345 0.47 +0.3
368,973 + Psest_0345 0.47 -0.7
368,973 + Psest_0345 0.47 -0.9
368,973 + Psest_0345 0.47 +1.1
368,973 + Psest_0345 0.47 -1.1
368,973 + Psest_0345 0.47 -2.1
368,973 + Psest_0345 0.47 +1.7
368,973 + Psest_0345 0.47 +1.0
368,973 + Psest_0345 0.47 -0.7
368,973 + Psest_0345 0.47 -1.4
368,973 + Psest_0345 0.47 +0.5
368,973 + Psest_0345 0.47 -1.2
368,974 - Psest_0345 0.47 -0.6
368,974 - Psest_0345 0.47 -0.1
368,974 - Psest_0345 0.47 +0.0
368,974 - Psest_0345 0.47 -0.4
368,974 - Psest_0345 0.47 -0.8
368,974 - Psest_0345 0.47 -0.0
368,974 - Psest_0345 0.47 +0.9
368,974 - Psest_0345 0.47 -2.4
368,974 - Psest_0345 0.47 -0.0
368,974 - Psest_0345 0.47 -1.9
368,974 - Psest_0345 0.47 -1.2
368,974 - Psest_0345 0.47 -0.0
368,974 - Psest_0345 0.47 -0.3
368,974 - Psest_0345 0.47 -1.2
368,974 - Psest_0345 0.47 +1.8
368,974 - Psest_0345 0.47 -3.0
368,974 - Psest_0345 0.47 +0.5
368,974 - Psest_0345 0.47 -0.2
368,974 - Psest_0345 0.47 -0.2
368,974 - Psest_0345 0.47 -1.1
368,975 + Psest_0345 0.47 +0.4
368,975 + Psest_0345 0.47 -0.2
368,975 + Psest_0345 0.47 -1.0
368,975 + Psest_0345 0.47 -1.8
368,975 + Psest_0345 0.47 -0.1
368,976 - Psest_0345 0.47 -2.7
368,976 - Psest_0345 0.47 -2.0
368,976 - Psest_0345 0.47 +1.8
368,976 - Psest_0345 0.47 +3.8
368,976 - Psest_0345 0.47 -1.8
368,976 - Psest_0345 0.47 -1.4
368,976 - Psest_0345 0.47 -0.9
368,976 - Psest_0345 0.47 -1.3
368,976 - Psest_0345 0.47 +0.1
368,976 - Psest_0345 0.47 +0.3
368,976 - Psest_0345 0.47 -0.1
369,152 + Psest_0345 0.82 +0.8
369,153 - Psest_0345 0.82 -0.2
369,203 + +0.6
369,203 + +0.6
369,203 + -1.4
369,203 + -1.0
369,204 - +0.7
369,204 - -0.4
369,204 - -3.3
369,218 + +1.3
369,219 - +0.6
369,219 - -3.2
369,516 - +0.7
369,525 + +1.1
369,528 - +0.5
369,528 - -0.1
369,528 - -0.3
369,528 - +1.3
369,536 + -0.4
369,553 - -0.3

Or see this region's nucleotide sequence