Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2572

Experiment: Cobalt chloride 0.06 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_2570 and Psest_2571 are separated by 176 nucleotidesPsest_2571 and Psest_2572 are separated by 45 nucleotidesPsest_2572 and Psest_2574 are separated by 406 nucleotidesPsest_2574 and Psest_2575 are separated by 37 nucleotidesPsest_2575 and Psest_2576 are separated by 257 nucleotides Psest_2570: Psest_2570 - Transcriptional regulator, at 2,751,709 to 2,752,617 _2570 Psest_2571: Psest_2571 - Glutathione S-transferase, at 2,752,794 to 2,753,423 _2571 Psest_2572: Psest_2572 - Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase, at 2,753,469 to 2,754,446 _2572 Psest_2574: Psest_2574 - tRNA_Asp_GTC, at 2,754,853 to 2,754,929 _2574 Psest_2575: Psest_2575 - tRNA_Val_CAC, at 2,754,967 to 2,755,042 _2575 Psest_2576: Psest_2576 - hypothetical protein, at 2,755,300 to 2,755,944 _2576 Position (kb) 2753 2754 2755Strain fitness (log2 ratio) -2 -1 0 1 2at 2752.648 kb on + strandat 2752.649 kb on - strandat 2752.649 kb on - strandat 2752.649 kb on - strandat 2752.787 kb on + strandat 2752.787 kb on + strandat 2752.787 kb on + strandat 2752.788 kb on - strandat 2753.016 kb on + strand, within Psest_2571at 2753.196 kb on - strand, within Psest_2571at 2753.280 kb on + strand, within Psest_2571at 2753.280 kb on + strand, within Psest_2571at 2753.281 kb on - strand, within Psest_2571at 2753.281 kb on - strand, within Psest_2571at 2753.281 kb on - strand, within Psest_2571at 2753.281 kb on - strand, within Psest_2571at 2753.286 kb on + strand, within Psest_2571at 2753.286 kb on + strand, within Psest_2571at 2753.286 kb on + strand, within Psest_2571at 2753.286 kb on + strand, within Psest_2571at 2753.286 kb on + strand, within Psest_2571at 2753.286 kb on + strand, within Psest_2571at 2753.286 kb on + strand, within Psest_2571at 2753.286 kb on + strand, within Psest_2571at 2753.286 kb on + strand, within Psest_2571at 2753.286 kb on + strand, within Psest_2571at 2753.286 kb on + strand, within Psest_2571at 2753.286 kb on + strand, within Psest_2571at 2753.286 kb on + strand, within Psest_2571at 2753.286 kb on + strand, within Psest_2571at 2753.287 kb on - strand, within Psest_2571at 2753.287 kb on - strand, within Psest_2571at 2753.287 kb on - strand, within Psest_2571at 2753.287 kb on - strand, within Psest_2571at 2753.287 kb on - strand, within Psest_2571at 2753.287 kb on - strand, within Psest_2571at 2753.287 kb on - strand, within Psest_2571at 2753.287 kb on - strand, within Psest_2571at 2753.381 kb on - strandat 2753.421 kb on + strandat 2753.422 kb on - strandat 2753.422 kb on - strandat 2753.493 kb on - strandat 2753.493 kb on - strandat 2753.677 kb on + strand, within Psest_2572at 2753.913 kb on + strand, within Psest_2572at 2753.913 kb on + strand, within Psest_2572at 2753.913 kb on + strand, within Psest_2572at 2753.913 kb on + strand, within Psest_2572at 2753.914 kb on - strand, within Psest_2572at 2753.914 kb on - strand, within Psest_2572at 2753.914 kb on - strand, within Psest_2572at 2753.914 kb on - strand, within Psest_2572at 2753.931 kb on + strand, within Psest_2572at 2753.932 kb on - strand, within Psest_2572at 2753.932 kb on - strand, within Psest_2572at 2753.932 kb on - strand, within Psest_2572at 2754.045 kb on + strand, within Psest_2572at 2754.046 kb on - strand, within Psest_2572at 2754.046 kb on - strand, within Psest_2572at 2754.046 kb on - strand, within Psest_2572at 2754.055 kb on - strand, within Psest_2572at 2754.241 kb on + strand, within Psest_2572at 2754.241 kb on + strand, within Psest_2572at 2754.241 kb on + strand, within Psest_2572at 2754.241 kb on + strand, within Psest_2572at 2754.242 kb on - strand, within Psest_2572at 2754.242 kb on - strand, within Psest_2572at 2754.242 kb on - strand, within Psest_2572at 2754.242 kb on - strand, within Psest_2572at 2754.242 kb on - strand, within Psest_2572at 2754.242 kb on - strand, within Psest_2572at 2754.449 kb on - strandat 2754.449 kb on - strandat 2754.449 kb on - strandat 2754.449 kb on - strandat 2754.606 kb on - strandat 2754.832 kb on - strandat 2755.068 kb on - strandat 2755.068 kb on - strandat 2755.085 kb on - strandat 2755.223 kb on - strandat 2755.293 kb on - strandat 2755.327 kb on + strandat 2755.384 kb on + strand, within Psest_2576at 2755.384 kb on + strand, within Psest_2576at 2755.385 kb on - strand, within Psest_2576at 2755.385 kb on - strand, within Psest_2576at 2755.385 kb on - strand, within Psest_2576at 2755.385 kb on - strand, within Psest_2576at 2755.443 kb on + strand, within Psest_2576at 2755.444 kb on - strand, within Psest_2576at 2755.444 kb on - strand, within Psest_2576

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.06 mM
remove
2,752,648 + -2.1
2,752,649 - -1.3
2,752,649 - +1.4
2,752,649 - -1.4
2,752,787 + +0.1
2,752,787 + -1.4
2,752,787 + +1.0
2,752,788 - +0.1
2,753,016 + Psest_2571 0.35 -0.9
2,753,196 - Psest_2571 0.64 -0.3
2,753,280 + Psest_2571 0.77 +1.4
2,753,280 + Psest_2571 0.77 -0.2
2,753,281 - Psest_2571 0.77 -0.3
2,753,281 - Psest_2571 0.77 -1.5
2,753,281 - Psest_2571 0.77 -0.4
2,753,281 - Psest_2571 0.77 -0.3
2,753,286 + Psest_2571 0.78 +1.0
2,753,286 + Psest_2571 0.78 -0.7
2,753,286 + Psest_2571 0.78 -0.4
2,753,286 + Psest_2571 0.78 -0.0
2,753,286 + Psest_2571 0.78 +0.1
2,753,286 + Psest_2571 0.78 +1.0
2,753,286 + Psest_2571 0.78 -0.1
2,753,286 + Psest_2571 0.78 +1.7
2,753,286 + Psest_2571 0.78 -1.1
2,753,286 + Psest_2571 0.78 +0.7
2,753,286 + Psest_2571 0.78 -0.3
2,753,286 + Psest_2571 0.78 -1.6
2,753,286 + Psest_2571 0.78 -0.5
2,753,286 + Psest_2571 0.78 -2.4
2,753,287 - Psest_2571 0.78 +0.0
2,753,287 - Psest_2571 0.78 +0.4
2,753,287 - Psest_2571 0.78 +0.8
2,753,287 - Psest_2571 0.78 -1.7
2,753,287 - Psest_2571 0.78 +0.0
2,753,287 - Psest_2571 0.78 +1.0
2,753,287 - Psest_2571 0.78 -0.2
2,753,287 - Psest_2571 0.78 +0.3
2,753,381 - -0.1
2,753,421 + -1.2
2,753,422 - -0.8
2,753,422 - +2.6
2,753,493 - +2.6
2,753,493 - +2.2
2,753,677 + Psest_2572 0.21 +1.1
2,753,913 + Psest_2572 0.45 +0.0
2,753,913 + Psest_2572 0.45 +2.1
2,753,913 + Psest_2572 0.45 -1.2
2,753,913 + Psest_2572 0.45 +0.4
2,753,914 - Psest_2572 0.46 +0.0
2,753,914 - Psest_2572 0.46 +1.7
2,753,914 - Psest_2572 0.46 -2.1
2,753,914 - Psest_2572 0.46 +0.2
2,753,931 + Psest_2572 0.47 -1.5
2,753,932 - Psest_2572 0.47 +1.1
2,753,932 - Psest_2572 0.47 -0.7
2,753,932 - Psest_2572 0.47 +0.2
2,754,045 + Psest_2572 0.59 +0.3
2,754,046 - Psest_2572 0.59 +0.3
2,754,046 - Psest_2572 0.59 +0.6
2,754,046 - Psest_2572 0.59 -0.6
2,754,055 - Psest_2572 0.60 +2.6
2,754,241 + Psest_2572 0.79 +0.8
2,754,241 + Psest_2572 0.79 +0.8
2,754,241 + Psest_2572 0.79 +0.6
2,754,241 + Psest_2572 0.79 +0.1
2,754,242 - Psest_2572 0.79 +0.7
2,754,242 - Psest_2572 0.79 +0.6
2,754,242 - Psest_2572 0.79 -0.2
2,754,242 - Psest_2572 0.79 +0.5
2,754,242 - Psest_2572 0.79 +1.0
2,754,242 - Psest_2572 0.79 +0.7
2,754,449 - +0.4
2,754,449 - -1.4
2,754,449 - -0.5
2,754,449 - -0.7
2,754,606 - +1.0
2,754,832 - +0.4
2,755,068 - +1.0
2,755,068 - +0.3
2,755,085 - +0.8
2,755,223 - -1.4
2,755,293 - -0.3
2,755,327 + -1.2
2,755,384 + Psest_2576 0.13 -0.7
2,755,384 + Psest_2576 0.13 -0.5
2,755,385 - Psest_2576 0.13 -0.1
2,755,385 - Psest_2576 0.13 +0.2
2,755,385 - Psest_2576 0.13 +1.2
2,755,385 - Psest_2576 0.13 +2.0
2,755,443 + Psest_2576 0.22 -0.6
2,755,444 - Psest_2576 0.22 +0.5
2,755,444 - Psest_2576 0.22 -0.5

Or see this region's nucleotide sequence