Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1157

Experiment: Cobalt chloride 0.06 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1156 and Psest_1157 are separated by 2 nucleotidesPsest_1157 and Psest_1158 are separated by 45 nucleotides Psest_1156: Psest_1156 - outer membrane component of uptake system, probably for ferrous iron (from data), at 1,255,876 to 1,256,970 _1156 Psest_1157: Psest_1157 - Predicted periplasmic lipoprotein, at 1,256,973 to 1,258,049 _1157 Psest_1158: Psest_1158 - Predicted thiol oxidoreductase, at 1,258,095 to 1,259,513 _1158 Position (kb) 1256 1257 1258 1259Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1256.088 kb on + strand, within Psest_1156at 1256.088 kb on + strand, within Psest_1156at 1256.151 kb on - strand, within Psest_1156at 1256.258 kb on + strand, within Psest_1156at 1256.259 kb on - strand, within Psest_1156at 1256.601 kb on - strand, within Psest_1156at 1256.601 kb on - strand, within Psest_1156at 1256.601 kb on - strand, within Psest_1156at 1256.601 kb on - strand, within Psest_1156at 1256.640 kb on - strand, within Psest_1156at 1256.640 kb on - strand, within Psest_1156at 1256.705 kb on + strand, within Psest_1156at 1256.705 kb on + strand, within Psest_1156at 1256.706 kb on - strand, within Psest_1156at 1256.706 kb on - strand, within Psest_1156at 1256.706 kb on - strand, within Psest_1156at 1256.754 kb on - strand, within Psest_1156at 1256.754 kb on - strand, within Psest_1156at 1257.067 kb on + strandat 1257.068 kb on - strandat 1257.316 kb on + strand, within Psest_1157at 1257.570 kb on - strand, within Psest_1157at 1257.610 kb on + strand, within Psest_1157at 1257.611 kb on - strand, within Psest_1157at 1257.611 kb on - strand, within Psest_1157at 1257.623 kb on + strand, within Psest_1157at 1257.624 kb on - strand, within Psest_1157at 1257.915 kb on - strand, within Psest_1157at 1257.916 kb on + strand, within Psest_1157at 1257.916 kb on + strand, within Psest_1157at 1257.916 kb on + strand, within Psest_1157at 1257.917 kb on - strand, within Psest_1157at 1257.917 kb on - strand, within Psest_1157at 1257.917 kb on - strand, within Psest_1157at 1257.930 kb on + strand, within Psest_1157at 1257.931 kb on - strand, within Psest_1157at 1258.036 kb on + strandat 1258.036 kb on + strandat 1258.037 kb on - strandat 1258.037 kb on - strandat 1258.060 kb on + strandat 1258.060 kb on + strandat 1258.061 kb on - strandat 1258.061 kb on - strandat 1258.061 kb on - strandat 1258.153 kb on - strandat 1258.194 kb on + strandat 1258.278 kb on + strand, within Psest_1158at 1258.278 kb on + strand, within Psest_1158at 1258.437 kb on + strand, within Psest_1158at 1258.438 kb on - strand, within Psest_1158at 1258.540 kb on + strand, within Psest_1158at 1258.541 kb on - strand, within Psest_1158at 1258.548 kb on + strand, within Psest_1158at 1258.548 kb on + strand, within Psest_1158at 1258.549 kb on - strand, within Psest_1158at 1258.562 kb on + strand, within Psest_1158at 1258.956 kb on + strand, within Psest_1158at 1258.957 kb on - strand, within Psest_1158at 1259.013 kb on + strand, within Psest_1158at 1259.013 kb on + strand, within Psest_1158at 1259.014 kb on - strand, within Psest_1158at 1259.014 kb on - strand, within Psest_1158at 1259.014 kb on - strand, within Psest_1158at 1259.014 kb on - strand, within Psest_1158at 1259.014 kb on - strand, within Psest_1158at 1259.014 kb on - strand, within Psest_1158at 1259.014 kb on - strand, within Psest_1158at 1259.014 kb on - strand, within Psest_1158at 1259.014 kb on - strand, within Psest_1158

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.06 mM
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1,256,088 + Psest_1156 0.19 -1.4
1,256,088 + Psest_1156 0.19 -1.1
1,256,151 - Psest_1156 0.25 +0.2
1,256,258 + Psest_1156 0.35 -1.1
1,256,259 - Psest_1156 0.35 -0.4
1,256,601 - Psest_1156 0.66 -0.4
1,256,601 - Psest_1156 0.66 +0.4
1,256,601 - Psest_1156 0.66 -0.4
1,256,601 - Psest_1156 0.66 +0.5
1,256,640 - Psest_1156 0.70 +1.8
1,256,640 - Psest_1156 0.70 -1.9
1,256,705 + Psest_1156 0.76 -2.8
1,256,705 + Psest_1156 0.76 +1.0
1,256,706 - Psest_1156 0.76 -0.8
1,256,706 - Psest_1156 0.76 -2.0
1,256,706 - Psest_1156 0.76 +0.5
1,256,754 - Psest_1156 0.80 -0.4
1,256,754 - Psest_1156 0.80 -0.0
1,257,067 + -0.5
1,257,068 - -0.7
1,257,316 + Psest_1157 0.32 -0.6
1,257,570 - Psest_1157 0.55 -1.6
1,257,610 + Psest_1157 0.59 -0.3
1,257,611 - Psest_1157 0.59 -1.1
1,257,611 - Psest_1157 0.59 -0.9
1,257,623 + Psest_1157 0.60 -2.7
1,257,624 - Psest_1157 0.60 -2.0
1,257,915 - Psest_1157 0.87 +0.6
1,257,916 + Psest_1157 0.88 -0.9
1,257,916 + Psest_1157 0.88 +0.2
1,257,916 + Psest_1157 0.88 +0.3
1,257,917 - Psest_1157 0.88 -1.5
1,257,917 - Psest_1157 0.88 -0.8
1,257,917 - Psest_1157 0.88 +0.0
1,257,930 + Psest_1157 0.89 -2.3
1,257,931 - Psest_1157 0.89 -0.1
1,258,036 + +0.0
1,258,036 + +0.8
1,258,037 - -0.8
1,258,037 - -1.8
1,258,060 + -0.9
1,258,060 + +0.0
1,258,061 - -0.5
1,258,061 - +0.1
1,258,061 - -0.1
1,258,153 - -2.2
1,258,194 + -0.5
1,258,278 + Psest_1158 0.13 -2.4
1,258,278 + Psest_1158 0.13 -1.9
1,258,437 + Psest_1158 0.24 -1.9
1,258,438 - Psest_1158 0.24 -1.6
1,258,540 + Psest_1158 0.31 -1.8
1,258,541 - Psest_1158 0.31 -2.4
1,258,548 + Psest_1158 0.32 -2.5
1,258,548 + Psest_1158 0.32 +0.2
1,258,549 - Psest_1158 0.32 -0.6
1,258,562 + Psest_1158 0.33 -2.8
1,258,956 + Psest_1158 0.61 -1.5
1,258,957 - Psest_1158 0.61 -2.6
1,259,013 + Psest_1158 0.65 -3.1
1,259,013 + Psest_1158 0.65 -1.5
1,259,014 - Psest_1158 0.65 -1.0
1,259,014 - Psest_1158 0.65 -0.5
1,259,014 - Psest_1158 0.65 +0.0
1,259,014 - Psest_1158 0.65 -0.7
1,259,014 - Psest_1158 0.65 -0.9
1,259,014 - Psest_1158 0.65 -1.2
1,259,014 - Psest_1158 0.65 -1.4
1,259,014 - Psest_1158 0.65 +0.5
1,259,014 - Psest_1158 0.65 -1.4

Or see this region's nucleotide sequence