Experiment: PEG (Day 1 ) - Cage1;Mouse5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0652 and BT0653 are separated by 4 nucleotides BT0653 and BT0654 are separated by 212 nucleotides BT0654 and BT0655 are separated by 155 nucleotides BT0655 and BT0656 are separated by 112 nucleotides
BT0652: BT0652 - putative thiamine-phosphate pyrophosphorylase (NCBI ptt file), at 802,785 to 803,414
BT0652
BT0653: BT0653 - thiS protein, involved in thiamine biosynthesis (NCBI ptt file), at 803,419 to 803,619
BT0653
BT0654: BT0654 - two-component sensor histidine kinase (NCBI ptt file), at 803,832 to 805,814
BT0654
BT0655: BT0655 - superoxide dismutase [Fe] (NCBI ptt file), at 805,970 to 806,551
BT0655
BT0656: BT0656 - conserved hypothetical protein (NCBI ptt file), at 806,664 to 808,406
BT0656
Position (kb) 803
804
805
806 Strain fitness (log2 ratio) -2
-1
0
1
2 at 802.905 kb on - strand, within BT0652 at 802.905 kb on - strand, within BT0652 at 802.983 kb on - strand, within BT0652 at 803.057 kb on - strand, within BT0652 at 803.372 kb on + strand at 803.396 kb on + strand at 803.667 kb on + strand at 803.668 kb on - strand at 803.682 kb on + strand at 803.894 kb on + strand at 803.894 kb on + strand at 803.895 kb on - strand at 803.934 kb on + strand at 804.148 kb on - strand, within BT0654 at 804.187 kb on + strand, within BT0654 at 804.187 kb on + strand, within BT0654 at 804.187 kb on + strand, within BT0654 at 804.194 kb on + strand, within BT0654 at 804.195 kb on - strand, within BT0654 at 804.195 kb on - strand, within BT0654 at 804.196 kb on + strand, within BT0654 at 804.196 kb on + strand, within BT0654 at 804.228 kb on + strand, within BT0654 at 804.282 kb on + strand, within BT0654 at 804.301 kb on + strand, within BT0654 at 804.301 kb on + strand, within BT0654 at 804.345 kb on + strand, within BT0654 at 804.555 kb on + strand, within BT0654 at 804.685 kb on - strand, within BT0654 at 804.685 kb on - strand, within BT0654 at 804.933 kb on - strand, within BT0654 at 804.935 kb on - strand, within BT0654 at 804.935 kb on - strand, within BT0654 at 805.015 kb on + strand, within BT0654 at 805.015 kb on + strand, within BT0654 at 805.017 kb on + strand, within BT0654 at 805.017 kb on + strand, within BT0654 at 805.034 kb on - strand, within BT0654 at 805.065 kb on - strand, within BT0654 at 805.317 kb on + strand, within BT0654 at 805.376 kb on + strand, within BT0654 at 805.451 kb on - strand, within BT0654 at 805.583 kb on + strand, within BT0654 at 805.669 kb on + strand at 805.686 kb on - strand at 805.814 kb on + strand at 805.869 kb on + strand at 805.942 kb on + strand at 805.948 kb on - strand at 805.948 kb on - strand at 806.022 kb on - strand at 806.322 kb on - strand, within BT0655 at 806.360 kb on - strand, within BT0655 at 806.360 kb on - strand, within BT0655 at 806.409 kb on + strand, within BT0655 at 806.444 kb on + strand, within BT0655 at 806.445 kb on - strand, within BT0655 at 806.448 kb on + strand, within BT0655 at 806.523 kb on + strand at 806.565 kb on - strand at 806.573 kb on + strand at 806.574 kb on - strand at 806.576 kb on + strand at 806.578 kb on + strand at 806.669 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PEG (Day 1 ) - Cage1;Mouse5 remove 802,905 - BT0652 0.19 -1.4 802,905 - BT0652 0.19 -2.5 802,983 - BT0652 0.31 -0.8 803,057 - BT0652 0.43 -0.8 803,372 + -2.0 803,396 + -0.1 803,667 + -0.4 803,668 - +0.2 803,682 + -1.4 803,894 + +2.2 803,894 + -0.1 803,895 - -0.4 803,934 + -0.9 804,148 - BT0654 0.16 +0.5 804,187 + BT0654 0.18 +0.2 804,187 + BT0654 0.18 -0.3 804,187 + BT0654 0.18 -0.3 804,194 + BT0654 0.18 -0.3 804,195 - BT0654 0.18 +0.2 804,195 - BT0654 0.18 +2.5 804,196 + BT0654 0.18 +2.4 804,196 + BT0654 0.18 -1.3 804,228 + BT0654 0.20 -0.8 804,282 + BT0654 0.23 +1.5 804,301 + BT0654 0.24 +2.7 804,301 + BT0654 0.24 +1.2 804,345 + BT0654 0.26 +0.4 804,555 + BT0654 0.36 +0.4 804,685 - BT0654 0.43 +1.7 804,685 - BT0654 0.43 -1.3 804,933 - BT0654 0.56 +1.0 804,935 - BT0654 0.56 +1.7 804,935 - BT0654 0.56 +0.0 805,015 + BT0654 0.60 +0.7 805,015 + BT0654 0.60 -0.8 805,017 + BT0654 0.60 -1.2 805,017 + BT0654 0.60 +1.2 805,034 - BT0654 0.61 +2.2 805,065 - BT0654 0.62 -0.1 805,317 + BT0654 0.75 +1.1 805,376 + BT0654 0.78 +1.9 805,451 - BT0654 0.82 +1.5 805,583 + BT0654 0.88 +0.2 805,669 + +1.2 805,686 - +2.2 805,814 + -1.9 805,869 + -1.1 805,942 + -1.1 805,948 - +0.0 805,948 - +1.3 806,022 - +0.7 806,322 - BT0655 0.60 +0.4 806,360 - BT0655 0.67 +2.1 806,360 - BT0655 0.67 +1.2 806,409 + BT0655 0.75 -0.3 806,444 + BT0655 0.81 -2.5 806,445 - BT0655 0.82 -0.1 806,448 + BT0655 0.82 +0.4 806,523 + +0.1 806,565 - -1.3 806,573 + +0.2 806,574 - -0.1 806,576 + -1.5 806,578 + -1.3 806,669 + -0.8
Or see this region's nucleotide sequence