Experiment: PEG (Day 1 ) - Cage1;Mouse5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0341 and BT0342 are separated by 213 nucleotides BT0342 and BT0343 are separated by 28 nucleotides
BT0341: BT0341 - Na+/glucose cotransporter (NCBI ptt file), at 409,308 to 410,879
BT0341
BT0342: BT0342 - conserved hypothetical protein (NCBI ptt file), at 411,093 to 411,866
BT0342
BT0343: BT0343 - methylcobamide:CoM methyltransferase mtbA (NCBI ptt file), at 411,895 to 412,911
BT0343
Position (kb) 411
412 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 410.303 kb on + strand, within BT0341 at 410.351 kb on + strand, within BT0341 at 410.355 kb on + strand, within BT0341 at 410.618 kb on + strand, within BT0341 at 410.626 kb on + strand, within BT0341 at 410.626 kb on + strand, within BT0341 at 410.627 kb on - strand, within BT0341 at 410.632 kb on + strand, within BT0341 at 410.633 kb on - strand, within BT0341 at 410.637 kb on + strand, within BT0341 at 410.637 kb on + strand, within BT0341 at 410.637 kb on + strand, within BT0341 at 410.637 kb on + strand, within BT0341 at 410.637 kb on + strand, within BT0341 at 410.700 kb on + strand, within BT0341 at 410.744 kb on - strand at 410.812 kb on + strand at 410.812 kb on + strand at 410.816 kb on + strand at 410.817 kb on - strand at 410.889 kb on - strand at 410.999 kb on - strand at 411.167 kb on + strand at 411.168 kb on - strand at 411.253 kb on - strand, within BT0342 at 411.399 kb on - strand, within BT0342 at 411.420 kb on + strand, within BT0342 at 411.546 kb on - strand, within BT0342 at 411.578 kb on + strand, within BT0342 at 411.624 kb on + strand, within BT0342 at 411.689 kb on + strand, within BT0342 at 411.755 kb on + strand, within BT0342 at 411.768 kb on + strand, within BT0342 at 411.845 kb on - strand at 411.943 kb on + strand at 411.943 kb on + strand at 411.961 kb on - strand at 411.962 kb on + strand at 412.025 kb on - strand, within BT0343 at 412.030 kb on + strand, within BT0343 at 412.031 kb on - strand, within BT0343 at 412.184 kb on - strand, within BT0343 at 412.188 kb on + strand, within BT0343 at 412.265 kb on - strand, within BT0343 at 412.280 kb on - strand, within BT0343 at 412.315 kb on + strand, within BT0343 at 412.340 kb on - strand, within BT0343 at 412.562 kb on + strand, within BT0343 at 412.770 kb on - strand, within BT0343
Per-strain Table
Position Strand Gene LocusTag Fraction PEG (Day 1 ) - Cage1;Mouse5 remove 410,303 + BT0341 0.63 -0.1 410,351 + BT0341 0.66 -2.7 410,355 + BT0341 0.67 +0.4 410,618 + BT0341 0.83 -2.2 410,626 + BT0341 0.84 -0.1 410,626 + BT0341 0.84 -1.9 410,627 - BT0341 0.84 -0.8 410,632 + BT0341 0.84 -0.0 410,633 - BT0341 0.84 -1.8 410,637 + BT0341 0.85 -1.2 410,637 + BT0341 0.85 -2.3 410,637 + BT0341 0.85 -0.4 410,637 + BT0341 0.85 -0.4 410,637 + BT0341 0.85 -0.4 410,700 + BT0341 0.89 -0.8 410,744 - -0.9 410,812 + -0.3 410,812 + +0.2 410,816 + +0.2 410,817 - -0.0 410,889 - -1.0 410,999 - -2.5 411,167 + -1.4 411,168 - -0.3 411,253 - BT0342 0.21 +0.2 411,399 - BT0342 0.40 -0.7 411,420 + BT0342 0.42 -0.1 411,546 - BT0342 0.59 -0.4 411,578 + BT0342 0.63 -3.4 411,624 + BT0342 0.69 -3.1 411,689 + BT0342 0.77 +3.6 411,755 + BT0342 0.86 -2.0 411,768 + BT0342 0.87 -1.7 411,845 - -2.5 411,943 + +0.6 411,943 + +0.1 411,961 - +0.2 411,962 + -1.8 412,025 - BT0343 0.13 -2.5 412,030 + BT0343 0.13 +0.2 412,031 - BT0343 0.13 +0.3 412,184 - BT0343 0.28 -0.8 412,188 + BT0343 0.29 -0.3 412,265 - BT0343 0.36 -0.4 412,280 - BT0343 0.38 +0.2 412,315 + BT0343 0.41 -1.6 412,340 - BT0343 0.44 +0.2 412,562 + BT0343 0.66 -1.4 412,770 - BT0343 0.86 -1.1
Or see this region's nucleotide sequence