Experiment: methyl 3-keto-a-D-glucopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00864 and SMc00863 are separated by 454 nucleotides SMc00863 and SMc00862 are separated by 7 nucleotides SMc00862 and SMc00861 are separated by 7 nucleotides
SMc00864: SMc00864 - hypothetical protein, at 922,416 to 923,495
SMc00864
SMc00863: SMc00863 - molybdenum cofactor biosynthesis protein B, at 923,950 to 924,492
SMc00863
SMc00862: SMc00862 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, at 924,500 to 925,405
SMc00862
SMc00861: SMc00861 - signal peptide protein, at 925,413 to 927,242
SMc00861
Position (kb) 923
924
925 Strain fitness (log2 ratio) -1
0
1 at 923.074 kb on + strand, within SMc00864 at 923.074 kb on + strand, within SMc00864 at 923.177 kb on - strand, within SMc00864 at 923.186 kb on + strand, within SMc00864 at 923.187 kb on - strand, within SMc00864 at 923.420 kb on - strand at 923.420 kb on - strand at 923.506 kb on + strand at 923.640 kb on + strand at 923.793 kb on + strand at 923.793 kb on + strand at 923.793 kb on + strand at 923.854 kb on - strand at 924.017 kb on + strand, within SMc00863 at 924.314 kb on + strand, within SMc00863 at 924.314 kb on + strand, within SMc00863 at 924.314 kb on + strand, within SMc00863 at 924.314 kb on + strand, within SMc00863 at 924.377 kb on - strand, within SMc00863
Per-strain Table
Position Strand Gene LocusTag Fraction methyl 3-keto-a-D-glucopyranoside (C) remove 923,074 + SMc00864 0.61 -0.6 923,074 + SMc00864 0.61 -0.3 923,177 - SMc00864 0.70 +0.0 923,186 + SMc00864 0.71 +0.5 923,187 - SMc00864 0.71 +0.6 923,420 - +0.7 923,420 - -0.1 923,506 + +0.0 923,640 + -0.7 923,793 + -0.5 923,793 + -0.3 923,793 + -0.5 923,854 - -0.8 924,017 + SMc00863 0.12 -0.5 924,314 + SMc00863 0.67 -0.2 924,314 + SMc00863 0.67 -0.5 924,314 + SMc00863 0.67 -0.2 924,314 + SMc00863 0.67 -0.4 924,377 - SMc00863 0.79 -0.6
Or see this region's nucleotide sequence