Experiment: methyl 3-keto-a-D-glucopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0769 and SMa0771 are separated by 188 nucleotides SMa0771 and SMa0772 are separated by 102 nucleotides SMa0772 and SMa0773 are separated by 387 nucleotides
SMa0769: SMa0769 - FixP2 Diheme c-type cytochrome, at 416,717 to 417,580
SMa0769
SMa0771: SMa0771 - hypothetical protein, at 417,769 to 418,242
SMa0771
SMa0772: SMa0772 - NodL Nod factor acetyltransferase, at 418,345 to 418,896
SMa0772
SMa0773: SMa0773 - NoeA host specific nodulation protein, at 419,284 to 420,714
SMa0773
Position (kb) 418
419 Strain fitness (log2 ratio) -1
0
1
2 at 418.141 kb on - strand, within SMa0771 at 418.195 kb on - strand at 418.260 kb on - strand at 418.292 kb on - strand at 418.292 kb on - strand at 418.455 kb on + strand, within SMa0772 at 418.456 kb on - strand, within SMa0772 at 418.559 kb on - strand, within SMa0772 at 418.592 kb on - strand, within SMa0772 at 418.592 kb on - strand, within SMa0772 at 418.592 kb on - strand, within SMa0772 at 418.593 kb on + strand, within SMa0772 at 418.676 kb on - strand, within SMa0772 at 418.676 kb on - strand, within SMa0772 at 418.941 kb on - strand at 419.064 kb on - strand at 419.102 kb on + strand at 419.102 kb on + strand at 419.103 kb on - strand at 419.133 kb on - strand at 419.151 kb on + strand at 419.151 kb on + strand at 419.152 kb on - strand at 419.240 kb on + strand at 419.447 kb on + strand, within SMa0773 at 419.530 kb on - strand, within SMa0773 at 419.680 kb on + strand, within SMa0773 at 419.769 kb on + strand, within SMa0773 at 419.769 kb on + strand, within SMa0773 at 419.770 kb on - strand, within SMa0773
Per-strain Table
Position Strand Gene LocusTag Fraction methyl 3-keto-a-D-glucopyranoside (C) remove 418,141 - SMa0771 0.78 -0.2 418,195 - +1.1 418,260 - +0.1 418,292 - +1.5 418,292 - +0.2 418,455 + SMa0772 0.20 +0.2 418,456 - SMa0772 0.20 -1.3 418,559 - SMa0772 0.39 +1.2 418,592 - SMa0772 0.45 -1.2 418,592 - SMa0772 0.45 -0.7 418,592 - SMa0772 0.45 -0.7 418,593 + SMa0772 0.45 +1.4 418,676 - SMa0772 0.60 -0.0 418,676 - SMa0772 0.60 +0.5 418,941 - -1.3 419,064 - -1.0 419,102 + -0.5 419,102 + +0.3 419,103 - +0.8 419,133 - +0.2 419,151 + -0.2 419,151 + +0.0 419,152 - +0.3 419,240 + -0.8 419,447 + SMa0773 0.11 +0.6 419,530 - SMa0773 0.17 -0.4 419,680 + SMa0773 0.28 +0.5 419,769 + SMa0773 0.34 +1.8 419,769 + SMa0773 0.34 -0.1 419,770 - SMa0773 0.34 -1.2
Or see this region's nucleotide sequence