Strain Fitness in Sinorhizobium meliloti 1021 around SMa0060

Experiment: methyl 3-keto-a-D-glucopyranoside (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0058 and SMa0059 are separated by 14 nucleotidesSMa0059 and SMa0060 overlap by 1 nucleotidesSMa0060 and SMa0062 are separated by 210 nucleotides SMa0058: SMa0058 - N-acylglucosamine 2-epimerase, at 29,492 to 30,688 SMa0058 SMa0059: SMa0059 - short-chain alcohol dehydrogenase, at 30,703 to 31,488 SMa0059 SMa0060: SMa0060 - gluconolactonase, at 31,488 to 32,423 SMa0060 SMa0062: SMa0062 - GntR family transcriptional regulator, at 32,634 to 33,323 SMa0062 Position (kb) 31 32 33Strain fitness (log2 ratio) -1 0 1 2at 30.499 kb on - strand, within SMa0058at 30.499 kb on - strand, within SMa0058at 30.570 kb on + strandat 30.579 kb on + strandat 30.579 kb on + strandat 30.619 kb on - strandat 30.966 kb on + strand, within SMa0059at 30.967 kb on - strand, within SMa0059at 30.967 kb on - strand, within SMa0059at 31.035 kb on - strand, within SMa0059at 31.061 kb on + strand, within SMa0059at 31.062 kb on - strand, within SMa0059at 31.062 kb on - strand, within SMa0059at 31.062 kb on - strand, within SMa0059at 31.242 kb on + strand, within SMa0059at 31.602 kb on - strand, within SMa0060at 31.645 kb on + strand, within SMa0060at 31.646 kb on - strand, within SMa0060at 31.646 kb on - strand, within SMa0060at 31.891 kb on + strand, within SMa0060at 31.891 kb on + strand, within SMa0060at 31.892 kb on - strand, within SMa0060at 31.966 kb on + strand, within SMa0060at 31.966 kb on + strand, within SMa0060at 31.966 kb on + strand, within SMa0060at 31.967 kb on - strand, within SMa0060at 31.973 kb on + strand, within SMa0060at 32.014 kb on + strand, within SMa0060at 32.039 kb on + strand, within SMa0060at 32.040 kb on - strand, within SMa0060at 32.338 kb on + strandat 32.338 kb on + strandat 32.515 kb on + strandat 32.616 kb on - strandat 32.620 kb on - strandat 32.769 kb on - strand, within SMa0062at 32.951 kb on - strand, within SMa0062at 33.049 kb on - strand, within SMa0062at 33.107 kb on + strand, within SMa0062at 33.107 kb on + strand, within SMa0062at 33.108 kb on - strand, within SMa0062at 33.288 kb on + strandat 33.351 kb on + strandat 33.351 kb on + strandat 33.351 kb on + strandat 33.352 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methyl 3-keto-a-D-glucopyranoside (C)
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30,499 - SMa0058 0.84 -0.2
30,499 - SMa0058 0.84 -0.2
30,570 + +0.3
30,579 + -0.7
30,579 + -0.4
30,619 - -0.7
30,966 + SMa0059 0.33 +0.2
30,967 - SMa0059 0.34 -0.0
30,967 - SMa0059 0.34 -0.2
31,035 - SMa0059 0.42 +0.2
31,061 + SMa0059 0.46 -0.8
31,062 - SMa0059 0.46 +0.9
31,062 - SMa0059 0.46 +1.8
31,062 - SMa0059 0.46 -0.1
31,242 + SMa0059 0.69 +0.8
31,602 - SMa0060 0.12 -0.2
31,645 + SMa0060 0.17 -0.5
31,646 - SMa0060 0.17 +0.3
31,646 - SMa0060 0.17 +0.6
31,891 + SMa0060 0.43 +0.2
31,891 + SMa0060 0.43 -0.4
31,892 - SMa0060 0.43 +0.0
31,966 + SMa0060 0.51 -0.3
31,966 + SMa0060 0.51 +0.9
31,966 + SMa0060 0.51 +0.5
31,967 - SMa0060 0.51 -0.3
31,973 + SMa0060 0.52 -0.1
32,014 + SMa0060 0.56 -0.5
32,039 + SMa0060 0.59 -1.5
32,040 - SMa0060 0.59 -0.4
32,338 + +0.4
32,338 + -0.5
32,515 + -0.2
32,616 - -0.1
32,620 - -0.3
32,769 - SMa0062 0.20 -1.3
32,951 - SMa0062 0.46 +0.4
33,049 - SMa0062 0.60 +1.2
33,107 + SMa0062 0.69 -0.4
33,107 + SMa0062 0.69 -0.3
33,108 - SMa0062 0.69 -0.1
33,288 + +0.6
33,351 + +0.5
33,351 + +0.4
33,351 + +0.1
33,352 - -0.5

Or see this region's nucleotide sequence