Experiment: methyl 3-keto-a-D-glucopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20305 and SM_b20307 are separated by 92 nucleotides SM_b20307 and SM_b20312 are separated by 78 nucleotides SM_b20312 and SM_b20313 are separated by 113 nucleotides SM_b20313 and SM_b20314 overlap by 32 nucleotides
SM_b20305: SM_b20305 - ISRm2011-2 transposase, N-terminal portion, at 311,301 to 311,708
_b20305
SM_b20307: SM_b20307 - dihydroxyacetone kinase, at 311,801 to 312,448
_b20307
SM_b20312: SM_b20312 - dihydroxyacetone kinase, at 312,527 to 314,614
_b20312
SM_b20313: SM_b20313 - glycerone kinase, at 314,728 to 315,411
_b20313
SM_b20314: SM_b20314 - glycerone kinase, at 315,380 to 316,372
_b20314
Position (kb) 312
313
314
315 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 311.933 kb on - strand, within SM_b20307 at 312.528 kb on + strand at 312.639 kb on + strand at 312.713 kb on - strand at 312.714 kb on + strand at 312.714 kb on + strand at 312.714 kb on + strand at 312.715 kb on - strand at 312.715 kb on - strand at 312.715 kb on - strand at 312.715 kb on - strand at 312.967 kb on + strand, within SM_b20312 at 312.967 kb on + strand, within SM_b20312 at 312.969 kb on + strand, within SM_b20312 at 312.970 kb on - strand, within SM_b20312 at 313.143 kb on - strand, within SM_b20312 at 313.143 kb on - strand, within SM_b20312 at 313.336 kb on - strand, within SM_b20312 at 313.336 kb on - strand, within SM_b20312 at 313.618 kb on + strand, within SM_b20312 at 313.659 kb on + strand, within SM_b20312 at 313.659 kb on + strand, within SM_b20312 at 313.730 kb on + strand, within SM_b20312 at 313.888 kb on + strand, within SM_b20312 at 313.888 kb on - strand, within SM_b20312 at 313.993 kb on + strand, within SM_b20312 at 313.993 kb on + strand, within SM_b20312 at 313.994 kb on - strand, within SM_b20312 at 313.994 kb on - strand, within SM_b20312 at 314.092 kb on + strand, within SM_b20312 at 314.093 kb on - strand, within SM_b20312 at 314.093 kb on - strand, within SM_b20312 at 314.212 kb on + strand, within SM_b20312 at 314.490 kb on + strand at 314.493 kb on + strand at 314.515 kb on - strand at 314.625 kb on - strand at 315.019 kb on + strand, within SM_b20313 at 315.020 kb on - strand, within SM_b20313 at 315.020 kb on - strand, within SM_b20313 at 315.053 kb on + strand, within SM_b20313 at 315.294 kb on - strand, within SM_b20313 at 315.486 kb on + strand, within SM_b20314 at 315.486 kb on + strand, within SM_b20314 at 315.487 kb on - strand, within SM_b20314 at 315.487 kb on - strand, within SM_b20314 at 315.508 kb on - strand, within SM_b20314 at 315.562 kb on - strand, within SM_b20314
Per-strain Table
Position Strand Gene LocusTag Fraction methyl 3-keto-a-D-glucopyranoside (C) remove 311,933 - SM_b20307 0.20 +0.6 312,528 + +0.1 312,639 + -1.9 312,713 - -1.2 312,714 + +0.3 312,714 + -1.0 312,714 + +0.1 312,715 - -1.4 312,715 - -3.1 312,715 - -0.9 312,715 - -0.4 312,967 + SM_b20312 0.21 -0.8 312,967 + SM_b20312 0.21 -1.8 312,969 + SM_b20312 0.21 -1.3 312,970 - SM_b20312 0.21 +0.1 313,143 - SM_b20312 0.30 -1.7 313,143 - SM_b20312 0.30 -1.0 313,336 - SM_b20312 0.39 -2.3 313,336 - SM_b20312 0.39 +0.6 313,618 + SM_b20312 0.52 -1.8 313,659 + SM_b20312 0.54 -2.7 313,659 + SM_b20312 0.54 -2.6 313,730 + SM_b20312 0.58 -1.5 313,888 + SM_b20312 0.65 -0.5 313,888 - SM_b20312 0.65 -2.2 313,993 + SM_b20312 0.70 -1.9 313,993 + SM_b20312 0.70 -1.2 313,994 - SM_b20312 0.70 -0.2 313,994 - SM_b20312 0.70 -0.5 314,092 + SM_b20312 0.75 -0.0 314,093 - SM_b20312 0.75 -0.9 314,093 - SM_b20312 0.75 -0.9 314,212 + SM_b20312 0.81 -1.9 314,490 + +1.9 314,493 + -0.2 314,515 - -0.9 314,625 - +0.6 315,019 + SM_b20313 0.43 -1.1 315,020 - SM_b20313 0.43 +0.1 315,020 - SM_b20313 0.43 +0.0 315,053 + SM_b20313 0.48 -0.9 315,294 - SM_b20313 0.83 -0.6 315,486 + SM_b20314 0.11 -0.3 315,486 + SM_b20314 0.11 +0.6 315,487 - SM_b20314 0.11 -0.5 315,487 - SM_b20314 0.11 -0.1 315,508 - SM_b20314 0.13 +0.1 315,562 - SM_b20314 0.18 -0.5
Or see this region's nucleotide sequence