Experiment: methyl 3-keto-a-D-glucopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20200 and SM_b20201 are separated by 10 nucleotides SM_b20201 and SM_b20202 are separated by 10 nucleotides SM_b20202 and SM_b20203 are separated by 101 nucleotides
SM_b20200: SM_b20200 - transketolase, at 208,342 to 210,426
_b20200
SM_b20201: SM_b20201 - phosphoribulokinase, at 210,437 to 211,306
_b20201
SM_b20202: SM_b20202 - fructose-1,6-bisphosphatase, at 211,317 to 212,366
_b20202
SM_b20203: SM_b20203 - transcriptional regulator, at 212,468 to 213,409
_b20203
Position (kb) 211
212
213 Strain fitness (log2 ratio) -2
-1
0
1
2 at 210.552 kb on + strand, within SM_b20201 at 210.552 kb on + strand, within SM_b20201 at 210.553 kb on - strand, within SM_b20201 at 210.553 kb on - strand at 210.553 kb on - strand, within SM_b20201 at 210.553 kb on - strand, within SM_b20201 at 210.553 kb on - strand, within SM_b20201 at 210.553 kb on - strand, within SM_b20201 at 210.658 kb on + strand, within SM_b20201 at 210.730 kb on + strand, within SM_b20201 at 210.730 kb on + strand, within SM_b20201 at 210.730 kb on + strand, within SM_b20201 at 210.731 kb on - strand, within SM_b20201 at 210.731 kb on - strand, within SM_b20201 at 210.732 kb on + strand, within SM_b20201 at 210.732 kb on + strand, within SM_b20201 at 210.732 kb on + strand, within SM_b20201 at 210.733 kb on - strand, within SM_b20201 at 210.839 kb on + strand, within SM_b20201 at 211.017 kb on + strand, within SM_b20201 at 211.018 kb on - strand, within SM_b20201 at 211.223 kb on + strand at 211.307 kb on - strand at 211.307 kb on - strand at 211.565 kb on + strand, within SM_b20202 at 211.566 kb on - strand, within SM_b20202 at 211.566 kb on - strand, within SM_b20202 at 211.566 kb on - strand, within SM_b20202 at 211.568 kb on - strand, within SM_b20202 at 211.711 kb on + strand, within SM_b20202 at 211.711 kb on + strand, within SM_b20202 at 211.742 kb on - strand, within SM_b20202 at 211.799 kb on - strand, within SM_b20202 at 211.799 kb on - strand, within SM_b20202 at 211.888 kb on + strand, within SM_b20202 at 211.888 kb on + strand, within SM_b20202 at 211.889 kb on - strand, within SM_b20202 at 212.010 kb on - strand, within SM_b20202 at 212.104 kb on + strand, within SM_b20202 at 212.104 kb on + strand, within SM_b20202 at 212.146 kb on - strand, within SM_b20202 at 212.342 kb on - strand at 213.205 kb on + strand, within SM_b20203
Per-strain Table
Position Strand Gene LocusTag Fraction methyl 3-keto-a-D-glucopyranoside (C) remove 210,552 + SM_b20201 0.13 +0.1 210,552 + SM_b20201 0.13 -2.3 210,553 - SM_b20201 0.13 -0.0 210,553 - +1.8 210,553 - SM_b20201 0.13 -0.4 210,553 - SM_b20201 0.13 +0.3 210,553 - SM_b20201 0.13 -1.6 210,553 - SM_b20201 0.13 -0.3 210,658 + SM_b20201 0.25 -0.5 210,730 + SM_b20201 0.34 +0.0 210,730 + SM_b20201 0.34 -0.0 210,730 + SM_b20201 0.34 +0.5 210,731 - SM_b20201 0.34 -1.0 210,731 - SM_b20201 0.34 -0.1 210,732 + SM_b20201 0.34 -0.2 210,732 + SM_b20201 0.34 -0.1 210,732 + SM_b20201 0.34 -0.8 210,733 - SM_b20201 0.34 +0.8 210,839 + SM_b20201 0.46 +0.4 211,017 + SM_b20201 0.67 +0.3 211,018 - SM_b20201 0.67 -0.8 211,223 + +0.1 211,307 - -0.6 211,307 - -0.7 211,565 + SM_b20202 0.24 +0.2 211,566 - SM_b20202 0.24 -0.2 211,566 - SM_b20202 0.24 -0.3 211,566 - SM_b20202 0.24 -0.4 211,568 - SM_b20202 0.24 -0.5 211,711 + SM_b20202 0.38 +0.1 211,711 + SM_b20202 0.38 +1.4 211,742 - SM_b20202 0.40 +1.3 211,799 - SM_b20202 0.46 +0.7 211,799 - SM_b20202 0.46 +0.3 211,888 + SM_b20202 0.54 -1.6 211,888 + SM_b20202 0.54 -0.2 211,889 - SM_b20202 0.54 -1.0 212,010 - SM_b20202 0.66 +1.0 212,104 + SM_b20202 0.75 +0.2 212,104 + SM_b20202 0.75 +1.3 212,146 - SM_b20202 0.79 +0.4 212,342 - -0.2 213,205 + SM_b20203 0.78 +0.9
Or see this region's nucleotide sequence