Experiment: methyl 3-keto-a-D-glucopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20080 and SM_b20081 are separated by 19 nucleotides SM_b20081 and SM_b20082 overlap by 4 nucleotides SM_b20082 and SM_b20083 are separated by 291 nucleotides SM_b20083 and SM_b20084 are separated by 111 nucleotides SM_b20084 and SM_b20085 are separated by 51 nucleotides
SM_b20080: SM_b20080 - alcohol dehydrogenase, at 91,546 to 92,715
_b20080
SM_b20081: SM_b20081 - hypothetical protein, at 92,735 to 93,445
_b20081
SM_b20082: SM_b20082 - hypothetical protein, at 93,442 to 94,260
_b20082
SM_b20083: SM_b20083 - hypothetical protein, at 94,552 to 94,791
_b20083
SM_b20084: SM_b20084 - hypothetical protein, at 94,903 to 95,076
_b20084
SM_b20085: SM_b20085 - hypothetical protein, at 95,128 to 95,274
_b20085
Position (kb)
93
94
95 Strain fitness (log2 ratio)
-1
0
1
2 at 92.499 kb on - strand, within SM_b20080 at 92.563 kb on + strand, within SM_b20080 at 92.563 kb on + strand, within SM_b20080 at 92.659 kb on + strand at 92.829 kb on + strand, within SM_b20081 at 92.830 kb on - strand, within SM_b20081 at 93.089 kb on - strand, within SM_b20081 at 93.089 kb on - strand, within SM_b20081 at 93.089 kb on - strand, within SM_b20081 at 93.379 kb on + strand at 93.382 kb on - strand at 93.382 kb on - strand at 93.382 kb on - strand at 93.404 kb on + strand at 93.404 kb on + strand at 93.404 kb on + strand at 93.404 kb on + strand at 93.405 kb on - strand at 93.454 kb on - strand at 93.542 kb on + strand, within SM_b20082 at 93.543 kb on - strand, within SM_b20082 at 93.713 kb on + strand, within SM_b20082 at 93.713 kb on + strand, within SM_b20082 at 94.002 kb on - strand, within SM_b20082 at 94.379 kb on - strand at 94.447 kb on - strand at 94.551 kb on + strand at 94.551 kb on + strand at 94.551 kb on + strand at 94.551 kb on + strand at 94.552 kb on - strand at 94.552 kb on - strand at 94.552 kb on - strand at 94.714 kb on + strand, within SM_b20083 at 94.714 kb on + strand, within SM_b20083 at 94.714 kb on + strand, within SM_b20083 at 94.715 kb on - strand, within SM_b20083 at 94.829 kb on + strand at 94.830 kb on - strand at 94.856 kb on - strand at 94.904 kb on + strand at 94.904 kb on + strand at 94.957 kb on - strand, within SM_b20084 at 94.957 kb on - strand, within SM_b20084 at 94.957 kb on - strand, within SM_b20084 at 94.957 kb on - strand, within SM_b20084 at 94.970 kb on + strand, within SM_b20084 at 94.979 kb on - strand, within SM_b20084 at 95.036 kb on - strand, within SM_b20084 at 95.046 kb on + strand, within SM_b20084 at 95.046 kb on + strand, within SM_b20084 at 95.046 kb on + strand, within SM_b20084 at 95.058 kb on + strand, within SM_b20084 at 95.076 kb on + strand at 95.077 kb on - strand at 95.260 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction methyl 3-keto-a-D-glucopyranoside (C) remove 92,499 - SM_b20080 0.81 -0.4 92,563 + SM_b20080 0.87 -0.2 92,563 + SM_b20080 0.87 -1.6 92,659 + +0.1 92,829 + SM_b20081 0.13 -0.3 92,830 - SM_b20081 0.13 -0.8 93,089 - SM_b20081 0.50 +0.7 93,089 - SM_b20081 0.50 +0.6 93,089 - SM_b20081 0.50 +1.5 93,379 + +0.3 93,382 - +0.0 93,382 - +0.5 93,382 - +0.5 93,404 + +1.8 93,404 + -0.2 93,404 + -0.4 93,404 + -0.6 93,405 - -0.4 93,454 - +0.6 93,542 + SM_b20082 0.12 -0.3 93,543 - SM_b20082 0.12 +0.1 93,713 + SM_b20082 0.33 -1.0 93,713 + SM_b20082 0.33 -1.1 94,002 - SM_b20082 0.68 -1.0 94,379 - -1.4 94,447 - +0.0 94,551 + +0.4 94,551 + +0.1 94,551 + -1.5 94,551 + -0.2 94,552 - +0.0 94,552 - +0.2 94,552 - -0.2 94,714 + SM_b20083 0.68 +0.2 94,714 + SM_b20083 0.68 +0.4 94,714 + SM_b20083 0.68 -0.3 94,715 - SM_b20083 0.68 +1.2 94,829 + +0.4 94,830 - -1.7 94,856 - +2.5 94,904 + -1.6 94,904 + +1.6 94,957 - SM_b20084 0.31 -0.5 94,957 - SM_b20084 0.31 -0.3 94,957 - SM_b20084 0.31 -0.4 94,957 - SM_b20084 0.31 -0.3 94,970 + SM_b20084 0.39 -0.0 94,979 - SM_b20084 0.44 +0.5 95,036 - SM_b20084 0.76 +0.2 95,046 + SM_b20084 0.82 +1.5 95,046 + SM_b20084 0.82 -0.3 95,046 + SM_b20084 0.82 -0.7 95,058 + SM_b20084 0.89 +0.4 95,076 + -1.1 95,077 - -0.6 95,260 + -0.1
Or see this region's nucleotide sequence