Experiment: Cobalt chloride 0.05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2402 and Psest_2403 are separated by 31 nucleotides Psest_2403 and Psest_2404 are separated by 19 nucleotides
Psest_2402: Psest_2402 - Cyclopropane fatty acid synthase and related methyltransferases, at 2,554,646 to 2,555,935
_2402
Psest_2403: Psest_2403 - Methyl-accepting chemotaxis protein, at 2,555,967 to 2,557,460
_2403
Psest_2404: Psest_2404 - Coproporphyrinogen III oxidase and related Fe-S oxidoreductases, at 2,557,480 to 2,558,817
_2404
Position (kb)
2555
2556
2557
2558 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2555.132 kb on + strand, within Psest_2402 at 2555.133 kb on - strand, within Psest_2402 at 2555.133 kb on - strand, within Psest_2402 at 2555.133 kb on - strand, within Psest_2402 at 2555.133 kb on - strand, within Psest_2402 at 2555.276 kb on + strand, within Psest_2402 at 2555.277 kb on - strand, within Psest_2402 at 2555.277 kb on - strand, within Psest_2402 at 2555.277 kb on - strand, within Psest_2402 at 2555.277 kb on - strand, within Psest_2402 at 2555.339 kb on + strand, within Psest_2402 at 2555.340 kb on - strand, within Psest_2402 at 2555.342 kb on - strand, within Psest_2402 at 2555.483 kb on + strand, within Psest_2402 at 2555.483 kb on + strand, within Psest_2402 at 2555.484 kb on - strand, within Psest_2402 at 2555.600 kb on + strand, within Psest_2402 at 2555.600 kb on + strand, within Psest_2402 at 2555.601 kb on - strand, within Psest_2402 at 2555.783 kb on + strand, within Psest_2402 at 2555.783 kb on + strand, within Psest_2402 at 2555.784 kb on - strand, within Psest_2402 at 2555.784 kb on - strand, within Psest_2402 at 2555.784 kb on - strand, within Psest_2402 at 2555.807 kb on + strand at 2555.807 kb on + strand at 2555.808 kb on - strand at 2555.808 kb on - strand at 2555.808 kb on - strand at 2555.900 kb on + strand at 2556.001 kb on - strand at 2556.001 kb on - strand at 2556.001 kb on - strand at 2556.006 kb on - strand at 2556.034 kb on + strand at 2556.034 kb on + strand at 2556.034 kb on + strand at 2556.034 kb on + strand at 2556.034 kb on + strand at 2556.035 kb on - strand at 2556.035 kb on - strand at 2556.075 kb on + strand at 2556.075 kb on + strand at 2556.075 kb on + strand at 2556.075 kb on + strand at 2556.140 kb on + strand, within Psest_2403 at 2556.141 kb on - strand, within Psest_2403 at 2556.141 kb on - strand, within Psest_2403 at 2556.141 kb on - strand, within Psest_2403 at 2556.141 kb on - strand, within Psest_2403 at 2556.141 kb on - strand, within Psest_2403 at 2556.212 kb on + strand, within Psest_2403 at 2556.279 kb on + strand, within Psest_2403 at 2556.279 kb on + strand, within Psest_2403 at 2556.279 kb on + strand, within Psest_2403 at 2556.280 kb on - strand, within Psest_2403 at 2556.280 kb on - strand, within Psest_2403 at 2556.280 kb on - strand, within Psest_2403 at 2556.280 kb on - strand, within Psest_2403 at 2556.280 kb on - strand, within Psest_2403 at 2556.423 kb on + strand, within Psest_2403 at 2556.423 kb on + strand, within Psest_2403 at 2556.423 kb on + strand, within Psest_2403 at 2556.423 kb on + strand, within Psest_2403 at 2556.423 kb on + strand, within Psest_2403 at 2556.424 kb on - strand, within Psest_2403 at 2556.424 kb on - strand, within Psest_2403 at 2556.424 kb on - strand, within Psest_2403 at 2556.732 kb on + strand, within Psest_2403 at 2556.732 kb on + strand, within Psest_2403 at 2556.733 kb on - strand, within Psest_2403 at 2557.459 kb on - strand at 2557.517 kb on + strand at 2557.518 kb on - strand at 2557.518 kb on - strand at 2557.659 kb on - strand, within Psest_2404 at 2557.820 kb on + strand, within Psest_2404 at 2557.820 kb on + strand, within Psest_2404 at 2558.006 kb on + strand, within Psest_2404 at 2558.007 kb on - strand, within Psest_2404 at 2558.007 kb on - strand, within Psest_2404 at 2558.007 kb on - strand, within Psest_2404 at 2558.049 kb on - strand, within Psest_2404 at 2558.253 kb on + strand, within Psest_2404 at 2558.254 kb on - strand, within Psest_2404 at 2558.300 kb on + strand, within Psest_2404 at 2558.300 kb on + strand, within Psest_2404 at 2558.300 kb on + strand, within Psest_2404 at 2558.300 kb on + strand, within Psest_2404 at 2558.301 kb on - strand, within Psest_2404 at 2558.301 kb on - strand, within Psest_2404
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.05 mM remove 2,555,132 + Psest_2402 0.38 +1.2 2,555,133 - Psest_2402 0.38 +0.4 2,555,133 - Psest_2402 0.38 -0.5 2,555,133 - Psest_2402 0.38 -1.3 2,555,133 - Psest_2402 0.38 -0.6 2,555,276 + Psest_2402 0.49 -2.5 2,555,277 - Psest_2402 0.49 -0.3 2,555,277 - Psest_2402 0.49 +0.5 2,555,277 - Psest_2402 0.49 -2.2 2,555,277 - Psest_2402 0.49 +3.0 2,555,339 + Psest_2402 0.54 +0.3 2,555,340 - Psest_2402 0.54 +0.5 2,555,342 - Psest_2402 0.54 +0.6 2,555,483 + Psest_2402 0.65 +1.8 2,555,483 + Psest_2402 0.65 -0.2 2,555,484 - Psest_2402 0.65 +0.2 2,555,600 + Psest_2402 0.74 -0.6 2,555,600 + Psest_2402 0.74 +1.7 2,555,601 - Psest_2402 0.74 +2.7 2,555,783 + Psest_2402 0.88 +0.6 2,555,783 + Psest_2402 0.88 -1.7 2,555,784 - Psest_2402 0.88 +0.3 2,555,784 - Psest_2402 0.88 +0.8 2,555,784 - Psest_2402 0.88 +0.5 2,555,807 + -1.0 2,555,807 + +0.2 2,555,808 - -0.8 2,555,808 - +1.4 2,555,808 - -0.6 2,555,900 + +0.8 2,556,001 - +0.8 2,556,001 - -0.6 2,556,001 - -1.7 2,556,006 - -0.4 2,556,034 + -0.2 2,556,034 + +0.4 2,556,034 + -1.4 2,556,034 + -1.0 2,556,034 + -0.2 2,556,035 - -0.9 2,556,035 - +0.5 2,556,075 + -0.1 2,556,075 + +1.2 2,556,075 + -1.0 2,556,075 + -1.3 2,556,140 + Psest_2403 0.12 +0.5 2,556,141 - Psest_2403 0.12 -0.6 2,556,141 - Psest_2403 0.12 -0.4 2,556,141 - Psest_2403 0.12 +0.2 2,556,141 - Psest_2403 0.12 -0.1 2,556,141 - Psest_2403 0.12 -0.5 2,556,212 + Psest_2403 0.16 -0.5 2,556,279 + Psest_2403 0.21 -0.2 2,556,279 + Psest_2403 0.21 +0.3 2,556,279 + Psest_2403 0.21 -0.3 2,556,280 - Psest_2403 0.21 +1.3 2,556,280 - Psest_2403 0.21 -2.7 2,556,280 - Psest_2403 0.21 -0.3 2,556,280 - Psest_2403 0.21 -2.2 2,556,280 - Psest_2403 0.21 -0.7 2,556,423 + Psest_2403 0.31 -0.7 2,556,423 + Psest_2403 0.31 -0.7 2,556,423 + Psest_2403 0.31 -1.4 2,556,423 + Psest_2403 0.31 -0.6 2,556,423 + Psest_2403 0.31 +0.1 2,556,424 - Psest_2403 0.31 -1.5 2,556,424 - Psest_2403 0.31 -2.8 2,556,424 - Psest_2403 0.31 +0.5 2,556,732 + Psest_2403 0.51 -2.7 2,556,732 + Psest_2403 0.51 -0.5 2,556,733 - Psest_2403 0.51 -0.5 2,557,459 - +0.3 2,557,517 + +0.3 2,557,518 - -0.2 2,557,518 - -0.6 2,557,659 - Psest_2404 0.13 -0.8 2,557,820 + Psest_2404 0.25 -1.4 2,557,820 + Psest_2404 0.25 +0.3 2,558,006 + Psest_2404 0.39 +1.7 2,558,007 - Psest_2404 0.39 +1.5 2,558,007 - Psest_2404 0.39 -0.2 2,558,007 - Psest_2404 0.39 -0.4 2,558,049 - Psest_2404 0.43 -0.7 2,558,253 + Psest_2404 0.58 -1.9 2,558,254 - Psest_2404 0.58 +0.1 2,558,300 + Psest_2404 0.61 +0.6 2,558,300 + Psest_2404 0.61 +0.9 2,558,300 + Psest_2404 0.61 +0.8 2,558,300 + Psest_2404 0.61 -0.2 2,558,301 - Psest_2404 0.61 +1.7 2,558,301 - Psest_2404 0.61 +0.3
Or see this region's nucleotide sequence