Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2123

Experiment: Cobalt chloride 0.05 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2121 and Psest_2122 are separated by 8 nucleotidesPsest_2122 and Psest_2123 are separated by 176 nucleotidesPsest_2123 and Psest_2124 are separated by 51 nucleotides Psest_2121: Psest_2121 - Predicted ATPase, at 2,252,501 to 2,253,610 _2121 Psest_2122: Psest_2122 - Parvulin-like peptidyl-prolyl isomerase, at 2,253,619 to 2,253,897 _2122 Psest_2123: Psest_2123 - fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data), at 2,254,074 to 2,255,204 _2123 Psest_2124: Psest_2124 - D-gluconate TRAP transporter, large permease component (from data), at 2,255,256 to 2,256,533 _2124 Position (kb) 2254 2255 2256Strain fitness (log2 ratio) -2 -1 0 1 2at 2253.476 kb on + strand, within Psest_2121at 2253.477 kb on - strand, within Psest_2121at 2253.477 kb on - strand, within Psest_2121at 2253.477 kb on - strand, within Psest_2121at 2253.497 kb on + strand, within Psest_2121at 2253.497 kb on + strand, within Psest_2121at 2253.498 kb on - strand, within Psest_2121at 2253.498 kb on - strand, within Psest_2121at 2253.500 kb on - strandat 2253.530 kb on + strandat 2253.531 kb on - strandat 2253.531 kb on - strandat 2253.531 kb on - strandat 2253.531 kb on - strandat 2253.788 kb on + strand, within Psest_2122at 2253.788 kb on + strand, within Psest_2122at 2253.932 kb on + strandat 2254.088 kb on + strandat 2254.535 kb on - strand, within Psest_2123at 2254.664 kb on + strand, within Psest_2123at 2254.665 kb on - strand, within Psest_2123at 2254.698 kb on + strand, within Psest_2123at 2255.228 kb on - strandat 2255.228 kb on - strandat 2255.255 kb on + strandat 2255.256 kb on - strandat 2255.256 kb on - strandat 2255.256 kb on - strandat 2255.256 kb on - strandat 2255.256 kb on - strandat 2255.256 kb on - strandat 2255.508 kb on + strand, within Psest_2124at 2255.509 kb on - strand, within Psest_2124at 2255.509 kb on - strand, within Psest_2124at 2255.509 kb on - strand, within Psest_2124at 2255.730 kb on + strand, within Psest_2124at 2255.730 kb on + strand, within Psest_2124at 2255.730 kb on + strand, within Psest_2124at 2255.731 kb on - strand, within Psest_2124at 2255.994 kb on + strand, within Psest_2124at 2255.994 kb on + strand, within Psest_2124at 2256.123 kb on + strand, within Psest_2124at 2256.123 kb on + strand, within Psest_2124at 2256.123 kb on + strand, within Psest_2124at 2256.123 kb on + strand, within Psest_2124at 2256.123 kb on + strand, within Psest_2124at 2256.123 kb on + strand, within Psest_2124at 2256.124 kb on - strand, within Psest_2124

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.05 mM
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2,253,476 + Psest_2121 0.88 -1.7
2,253,477 - Psest_2121 0.88 +0.8
2,253,477 - Psest_2121 0.88 -0.9
2,253,477 - Psest_2121 0.88 -0.6
2,253,497 + Psest_2121 0.90 -1.4
2,253,497 + Psest_2121 0.90 -0.5
2,253,498 - Psest_2121 0.90 +0.5
2,253,498 - Psest_2121 0.90 -0.8
2,253,500 - -0.5
2,253,530 + -0.1
2,253,531 - +2.0
2,253,531 - -0.2
2,253,531 - -1.0
2,253,531 - +0.5
2,253,788 + Psest_2122 0.61 -0.3
2,253,788 + Psest_2122 0.61 -1.0
2,253,932 + +0.5
2,254,088 + +0.4
2,254,535 - Psest_2123 0.41 -1.4
2,254,664 + Psest_2123 0.52 -1.7
2,254,665 - Psest_2123 0.52 -1.4
2,254,698 + Psest_2123 0.55 -1.1
2,255,228 - -0.8
2,255,228 - +0.0
2,255,255 + +0.3
2,255,256 - -0.3
2,255,256 - -1.0
2,255,256 - -0.5
2,255,256 - -2.0
2,255,256 - +0.9
2,255,256 - -0.1
2,255,508 + Psest_2124 0.20 +1.3
2,255,509 - Psest_2124 0.20 -0.3
2,255,509 - Psest_2124 0.20 +0.6
2,255,509 - Psest_2124 0.20 -0.8
2,255,730 + Psest_2124 0.37 -0.8
2,255,730 + Psest_2124 0.37 -0.9
2,255,730 + Psest_2124 0.37 -0.8
2,255,731 - Psest_2124 0.37 +0.9
2,255,994 + Psest_2124 0.58 +0.3
2,255,994 + Psest_2124 0.58 +0.6
2,256,123 + Psest_2124 0.68 -0.6
2,256,123 + Psest_2124 0.68 +0.8
2,256,123 + Psest_2124 0.68 -0.7
2,256,123 + Psest_2124 0.68 +1.1
2,256,123 + Psest_2124 0.68 -0.3
2,256,123 + Psest_2124 0.68 -0.8
2,256,124 - Psest_2124 0.68 -0.9

Or see this region's nucleotide sequence