Experiment: methyl-beta-D-xylopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02840 and SMc02841 are separated by 488 nucleotides SMc02841 and SMc02842 are separated by 76 nucleotides SMc02842 and SMc02843 are separated by 22 nucleotides
SMc02840: SMc02840 - partial transposase for insertion sequence element ISRM5, at 190,001 to 190,951
SMc02840
SMc02841: SMc02841 - methylated-DNA--protein-cysteine methyltransferase transcription regulator, at 191,440 to 192,312
SMc02841
SMc02842: SMc02842 - hypothetical protein, at 192,389 to 192,886
SMc02842
SMc02843: SMc02843 - endonuclease III protein, at 192,909 to 193,700
SMc02843
Position (kb) 191
192
193 Strain fitness (log2 ratio) -1
0
1 at 191.388 kb on + strand at 191.631 kb on - strand, within SMc02841 at 191.792 kb on + strand, within SMc02841 at 191.792 kb on + strand, within SMc02841 at 191.792 kb on + strand, within SMc02841 at 191.792 kb on + strand, within SMc02841 at 191.793 kb on - strand, within SMc02841 at 191.793 kb on - strand, within SMc02841 at 191.793 kb on - strand, within SMc02841 at 191.793 kb on - strand, within SMc02841 at 191.793 kb on - strand, within SMc02841 at 192.219 kb on - strand, within SMc02841 at 192.300 kb on + strand at 192.301 kb on - strand at 192.353 kb on + strand at 192.353 kb on + strand at 192.354 kb on - strand at 192.354 kb on - strand at 192.660 kb on + strand, within SMc02842 at 192.785 kb on + strand, within SMc02842 at 192.785 kb on + strand, within SMc02842 at 192.786 kb on - strand, within SMc02842 at 192.899 kb on + strand at 192.900 kb on - strand at 192.900 kb on - strand at 193.005 kb on + strand, within SMc02843 at 193.227 kb on + strand, within SMc02843 at 193.227 kb on + strand, within SMc02843 at 193.230 kb on - strand, within SMc02843
Per-strain Table
Position Strand Gene LocusTag Fraction methyl-beta-D-xylopyranoside (C) remove 191,388 + -0.1 191,631 - SMc02841 0.22 -0.5 191,792 + SMc02841 0.40 -0.7 191,792 + SMc02841 0.40 +0.0 191,792 + SMc02841 0.40 -0.1 191,792 + SMc02841 0.40 +0.1 191,793 - SMc02841 0.40 -0.5 191,793 - SMc02841 0.40 +0.3 191,793 - SMc02841 0.40 -0.7 191,793 - SMc02841 0.40 -0.5 191,793 - SMc02841 0.40 -0.5 192,219 - SMc02841 0.89 -0.5 192,300 + +0.0 192,301 - +0.0 192,353 + +1.1 192,353 + +0.0 192,354 - +0.7 192,354 - -0.3 192,660 + SMc02842 0.54 +0.3 192,785 + SMc02842 0.80 -1.1 192,785 + SMc02842 0.80 -0.3 192,786 - SMc02842 0.80 +0.0 192,899 + -0.3 192,900 - -0.3 192,900 - -0.8 193,005 + SMc02843 0.12 +0.1 193,227 + SMc02843 0.40 +0.1 193,227 + SMc02843 0.40 +0.3 193,230 - SMc02843 0.41 +0.2
Or see this region's nucleotide sequence