Experiment: methyl-beta-D-xylopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21122 and SM_b21123 are separated by 14 nucleotides SM_b21123 and SM_b21124 are separated by 16 nucleotides SM_b21124 and SM_b21125 overlap by 4 nucleotides SM_b21125 and SM_b21126 overlap by 4 nucleotides
SM_b21122: SM_b21122 - 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) <small>(from data)</small>, at 760,760 to 762,367
_b21122
SM_b21123: SM_b21123 - translation initiation inhibitor, at 762,382 to 762,765
_b21123
SM_b21124: SM_b21124 - 3-methylcrotonyl-CoA carboxylase, alpha (biotin-containing) subunit (EC 6.4.1.4) <small>(from data)</small>, at 762,782 to 764,770
_b21124
SM_b21125: SM_b21125 - Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) <small>(from data)</small>, at 764,767 to 765,636
_b21125
SM_b21126: SM_b21126 - 3-methylglutaconyl-CoA hydratase (EC 4.2.1.18) <small>(from data)</small>, at 765,633 to 766,418
_b21126
Position (kb) 762
763
764
765 Strain fitness (log2 ratio) -1
0
1
2 at 761.912 kb on + strand, within SM_b21122 at 762.023 kb on + strand, within SM_b21122 at 762.210 kb on + strand at 762.211 kb on - strand at 762.236 kb on + strand at 762.237 kb on - strand at 762.237 kb on - strand at 762.497 kb on + strand, within SM_b21123 at 762.670 kb on + strand, within SM_b21123 at 762.670 kb on + strand, within SM_b21123 at 762.671 kb on - strand, within SM_b21123 at 762.763 kb on + strand at 762.763 kb on + strand at 762.764 kb on - strand at 762.782 kb on - strand at 762.782 kb on - strand at 762.959 kb on + strand at 762.977 kb on - strand at 763.083 kb on + strand, within SM_b21124 at 763.083 kb on + strand, within SM_b21124 at 763.083 kb on + strand, within SM_b21124 at 763.084 kb on - strand, within SM_b21124 at 763.084 kb on - strand, within SM_b21124 at 763.441 kb on + strand, within SM_b21124 at 763.497 kb on + strand, within SM_b21124 at 763.583 kb on + strand, within SM_b21124 at 763.649 kb on + strand, within SM_b21124 at 763.745 kb on - strand, within SM_b21124 at 763.777 kb on + strand, within SM_b21124 at 763.778 kb on - strand, within SM_b21124 at 763.815 kb on - strand, within SM_b21124 at 763.815 kb on - strand, within SM_b21124 at 763.921 kb on + strand, within SM_b21124 at 763.937 kb on + strand, within SM_b21124 at 763.937 kb on + strand, within SM_b21124 at 763.965 kb on + strand, within SM_b21124 at 763.965 kb on + strand, within SM_b21124 at 763.966 kb on - strand, within SM_b21124 at 764.029 kb on - strand, within SM_b21124 at 764.105 kb on - strand, within SM_b21124 at 765.021 kb on + strand, within SM_b21125 at 765.021 kb on + strand, within SM_b21125 at 765.193 kb on + strand, within SM_b21125 at 765.193 kb on + strand, within SM_b21125 at 765.193 kb on + strand, within SM_b21125 at 765.194 kb on - strand, within SM_b21125 at 765.221 kb on - strand, within SM_b21125 at 765.221 kb on - strand, within SM_b21125 at 765.287 kb on - strand, within SM_b21125 at 765.402 kb on + strand, within SM_b21125 at 765.402 kb on + strand, within SM_b21125 at 765.403 kb on - strand, within SM_b21125 at 765.496 kb on + strand, within SM_b21125 at 765.526 kb on - strand, within SM_b21125
Per-strain Table
Position Strand Gene LocusTag Fraction methyl-beta-D-xylopyranoside (C) remove 761,912 + SM_b21122 0.72 -1.1 762,023 + SM_b21122 0.79 -0.1 762,210 + -0.0 762,211 - -0.3 762,236 + -0.5 762,237 - +0.7 762,237 - +0.1 762,497 + SM_b21123 0.30 +0.6 762,670 + SM_b21123 0.75 +0.0 762,670 + SM_b21123 0.75 -0.6 762,671 - SM_b21123 0.75 -0.3 762,763 + -0.2 762,763 + -0.8 762,764 - +0.3 762,782 - +0.2 762,782 - -0.4 762,959 + -0.3 762,977 - -0.3 763,083 + SM_b21124 0.15 -0.4 763,083 + SM_b21124 0.15 -0.1 763,083 + SM_b21124 0.15 +2.4 763,084 - SM_b21124 0.15 +1.7 763,084 - SM_b21124 0.15 +1.1 763,441 + SM_b21124 0.33 -0.2 763,497 + SM_b21124 0.36 +0.2 763,583 + SM_b21124 0.40 +0.2 763,649 + SM_b21124 0.44 +0.9 763,745 - SM_b21124 0.48 -1.6 763,777 + SM_b21124 0.50 +0.4 763,778 - SM_b21124 0.50 +0.6 763,815 - SM_b21124 0.52 +1.1 763,815 - SM_b21124 0.52 +0.4 763,921 + SM_b21124 0.57 +0.8 763,937 + SM_b21124 0.58 -0.5 763,937 + SM_b21124 0.58 +0.3 763,965 + SM_b21124 0.59 +0.7 763,965 + SM_b21124 0.59 +1.4 763,966 - SM_b21124 0.60 +0.6 764,029 - SM_b21124 0.63 +0.1 764,105 - SM_b21124 0.67 -0.1 765,021 + SM_b21125 0.29 +0.9 765,021 + SM_b21125 0.29 -1.5 765,193 + SM_b21125 0.49 -0.6 765,193 + SM_b21125 0.49 +0.1 765,193 + SM_b21125 0.49 +0.1 765,194 - SM_b21125 0.49 -1.2 765,221 - SM_b21125 0.52 -0.1 765,221 - SM_b21125 0.52 +0.6 765,287 - SM_b21125 0.60 -0.7 765,402 + SM_b21125 0.73 +0.1 765,402 + SM_b21125 0.73 +0.4 765,403 - SM_b21125 0.73 -1.0 765,496 + SM_b21125 0.84 +0.4 765,526 - SM_b21125 0.87 -0.4
Or see this region's nucleotide sequence