Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0867 and Psest_0868 are separated by 45 nucleotides Psest_0868 and Psest_0869 are separated by 174 nucleotides Psest_0869 and Psest_0870 are separated by 150 nucleotides
Psest_0867: Psest_0867 - hypothetical protein, at 943,556 to 943,984
_0867
Psest_0868: Psest_0868 - Glutathione S-transferase, at 944,030 to 944,653
_0868
Psest_0869: Psest_0869 - Acetyltransferase (isoleucine patch superfamily), at 944,828 to 945,376
_0869
Psest_0870: Psest_0870 - Alpha-glucosidase (EC 3.2.1.20) <small>(from data)</small>, at 945,527 to 947,155
_0870
Position (kb) 944
945
946 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 943.957 kb on - strand at 943.957 kb on - strand at 944.325 kb on + strand, within Psest_0868 at 944.325 kb on + strand, within Psest_0868 at 944.325 kb on + strand, within Psest_0868 at 944.325 kb on + strand, within Psest_0868 at 944.325 kb on + strand, within Psest_0868 at 944.326 kb on - strand, within Psest_0868 at 944.326 kb on - strand, within Psest_0868 at 944.328 kb on + strand, within Psest_0868 at 944.582 kb on + strand, within Psest_0868 at 944.582 kb on + strand, within Psest_0868 at 944.582 kb on + strand, within Psest_0868 at 944.582 kb on + strand, within Psest_0868 at 944.583 kb on - strand, within Psest_0868 at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.633 kb on - strand at 944.633 kb on - strand at 944.633 kb on - strand at 944.633 kb on - strand at 944.633 kb on - strand at 944.633 kb on - strand at 944.633 kb on - strand at 944.633 kb on - strand at 944.633 kb on - strand at 944.633 kb on - strand at 944.634 kb on + strand at 944.634 kb on + strand at 944.634 kb on + strand at 944.870 kb on + strand at 944.870 kb on + strand at 944.870 kb on + strand at 944.870 kb on + strand at 944.871 kb on - strand at 944.871 kb on - strand at 944.871 kb on - strand at 944.871 kb on - strand at 944.874 kb on - strand at 944.933 kb on + strand, within Psest_0869 at 945.158 kb on + strand, within Psest_0869 at 945.158 kb on + strand, within Psest_0869 at 945.159 kb on - strand, within Psest_0869 at 945.420 kb on + strand at 945.484 kb on + strand at 945.484 kb on + strand at 945.484 kb on + strand at 945.485 kb on - strand at 945.514 kb on + strand at 945.514 kb on + strand at 945.514 kb on + strand at 945.514 kb on + strand at 945.514 kb on + strand at 945.514 kb on + strand at 945.514 kb on + strand at 945.515 kb on - strand at 945.515 kb on - strand at 945.515 kb on - strand at 945.515 kb on - strand at 945.515 kb on - strand at 945.515 kb on - strand at 945.515 kb on - strand at 945.519 kb on - strand at 945.519 kb on - strand at 945.569 kb on + strand at 945.569 kb on + strand at 945.569 kb on + strand at 945.579 kb on - strand at 945.579 kb on - strand at 945.586 kb on + strand at 945.586 kb on + strand at 945.586 kb on + strand at 945.587 kb on - strand at 945.587 kb on - strand at 945.587 kb on - strand at 945.650 kb on + strand at 945.650 kb on + strand at 945.650 kb on + strand at 945.650 kb on + strand at 945.650 kb on + strand at 945.912 kb on - strand, within Psest_0870 at 945.912 kb on - strand, within Psest_0870 at 945.912 kb on - strand, within Psest_0870 at 946.011 kb on - strand, within Psest_0870 at 946.011 kb on - strand, within Psest_0870 at 946.014 kb on - strand, within Psest_0870 at 946.014 kb on - strand, within Psest_0870 at 946.014 kb on - strand, within Psest_0870 at 946.014 kb on - strand, within Psest_0870 at 946.014 kb on - strand, within Psest_0870 at 946.014 kb on - strand, within Psest_0870 at 946.148 kb on + strand, within Psest_0870 at 946.148 kb on + strand, within Psest_0870 at 946.149 kb on - strand, within Psest_0870 at 946.149 kb on - strand, within Psest_0870 at 946.149 kb on - strand, within Psest_0870 at 946.249 kb on + strand, within Psest_0870 at 946.249 kb on + strand, within Psest_0870 at 946.250 kb on - strand, within Psest_0870 at 946.250 kb on - strand, within Psest_0870 at 946.250 kb on - strand, within Psest_0870 at 946.253 kb on + strand, within Psest_0870 at 946.253 kb on + strand, within Psest_0870 at 946.253 kb on + strand, within Psest_0870 at 946.253 kb on + strand, within Psest_0870 at 946.253 kb on + strand, within Psest_0870 at 946.253 kb on + strand, within Psest_0870 at 946.253 kb on + strand, within Psest_0870 at 946.253 kb on + strand, within Psest_0870 at 946.254 kb on - strand, within Psest_0870
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 943,957 - -1.0 943,957 - +0.4 944,325 + Psest_0868 0.47 -1.9 944,325 + Psest_0868 0.47 +2.3 944,325 + Psest_0868 0.47 -1.3 944,325 + Psest_0868 0.47 +0.1 944,325 + Psest_0868 0.47 -2.9 944,326 - Psest_0868 0.47 -0.4 944,326 - Psest_0868 0.47 +0.4 944,328 + Psest_0868 0.48 +0.8 944,582 + Psest_0868 0.88 -0.1 944,582 + Psest_0868 0.88 -0.5 944,582 + Psest_0868 0.88 -0.6 944,582 + Psest_0868 0.88 -0.2 944,583 - Psest_0868 0.89 -0.7 944,632 + -1.3 944,632 + -1.3 944,632 + -1.9 944,632 + -0.1 944,632 + +0.3 944,632 + +0.3 944,632 + +0.3 944,632 + -0.1 944,632 + +1.3 944,632 + +0.6 944,632 + -0.3 944,632 + -0.1 944,632 + +1.2 944,632 + -0.7 944,633 - -0.6 944,633 - -0.0 944,633 - -0.3 944,633 - -2.0 944,633 - -0.7 944,633 - -0.2 944,633 - +0.3 944,633 - +0.3 944,633 - +1.7 944,633 - +0.4 944,634 + +0.9 944,634 + -0.6 944,634 + -1.9 944,870 + -1.8 944,870 + +0.8 944,870 + -1.5 944,870 + -0.5 944,871 - -1.1 944,871 - +1.5 944,871 - +0.7 944,871 - +1.5 944,874 - +3.1 944,933 + Psest_0869 0.19 +0.7 945,158 + Psest_0869 0.60 -0.2 945,158 + Psest_0869 0.60 -1.1 945,159 - Psest_0869 0.60 +1.1 945,420 + +0.9 945,484 + +0.6 945,484 + +0.5 945,484 + -1.3 945,485 - +0.4 945,514 + -0.2 945,514 + -0.4 945,514 + +1.2 945,514 + -1.3 945,514 + -1.5 945,514 + -1.0 945,514 + -0.6 945,515 - +0.3 945,515 - -1.0 945,515 - -0.9 945,515 - -1.4 945,515 - -3.1 945,515 - -0.2 945,515 - -0.3 945,519 - -0.2 945,519 - -1.1 945,569 + +1.8 945,569 + -0.5 945,569 + +1.6 945,579 - -0.1 945,579 - +0.2 945,586 + +0.7 945,586 + -1.6 945,586 + -0.6 945,587 - +0.8 945,587 - +1.3 945,587 - +0.5 945,650 + -2.4 945,650 + +0.2 945,650 + +0.2 945,650 + -2.1 945,650 + -0.0 945,912 - Psest_0870 0.24 -0.3 945,912 - Psest_0870 0.24 -0.3 945,912 - Psest_0870 0.24 +1.2 946,011 - Psest_0870 0.30 +1.0 946,011 - Psest_0870 0.30 +0.7 946,014 - Psest_0870 0.30 -1.0 946,014 - Psest_0870 0.30 +0.6 946,014 - Psest_0870 0.30 +1.6 946,014 - Psest_0870 0.30 +0.3 946,014 - Psest_0870 0.30 -0.7 946,014 - Psest_0870 0.30 -2.2 946,148 + Psest_0870 0.38 +1.7 946,148 + Psest_0870 0.38 +0.9 946,149 - Psest_0870 0.38 +1.3 946,149 - Psest_0870 0.38 +0.3 946,149 - Psest_0870 0.38 +0.6 946,249 + Psest_0870 0.44 -0.5 946,249 + Psest_0870 0.44 -0.7 946,250 - Psest_0870 0.44 +0.0 946,250 - Psest_0870 0.44 -2.3 946,250 - Psest_0870 0.44 -0.5 946,253 + Psest_0870 0.45 +1.2 946,253 + Psest_0870 0.45 -0.0 946,253 + Psest_0870 0.45 -0.5 946,253 + Psest_0870 0.45 +1.0 946,253 + Psest_0870 0.45 +1.4 946,253 + Psest_0870 0.45 +1.1 946,253 + Psest_0870 0.45 -0.4 946,253 + Psest_0870 0.45 -0.0 946,254 - Psest_0870 0.45 -0.3
Or see this region's nucleotide sequence