Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0842

Experiment: Nickel (II) chloride 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0840 and Psest_0841 are separated by 74 nucleotidesPsest_0841 and Psest_0842 overlap by 4 nucleotidesPsest_0842 and Psest_0843 are separated by 49 nucleotides Psest_0840: Psest_0840 - anaerobic ribonucleoside-triphosphate reductase, at 910,238 to 912,256 _0840 Psest_0841: Psest_0841 - hypothetical protein, at 912,331 to 912,486 _0841 Psest_0842: Psest_0842 - anaerobic ribonucleoside-triphosphate reductase activating protein, at 912,483 to 913,178 _0842 Psest_0843: Psest_0843 - hypothetical protein, at 913,228 to 914,604 _0843 Position (kb) 912 913 914Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 911.513 kb on + strand, within Psest_0840at 911.514 kb on - strand, within Psest_0840at 911.828 kb on + strand, within Psest_0840at 911.828 kb on + strand, within Psest_0840at 911.828 kb on + strand, within Psest_0840at 911.829 kb on - strand, within Psest_0840at 911.829 kb on - strand, within Psest_0840at 911.933 kb on + strand, within Psest_0840at 911.936 kb on + strand, within Psest_0840at 911.936 kb on + strand, within Psest_0840at 911.937 kb on - strand, within Psest_0840at 911.937 kb on - strand, within Psest_0840at 911.937 kb on - strand, within Psest_0840at 912.020 kb on + strand, within Psest_0840at 912.020 kb on + strand, within Psest_0840at 912.020 kb on + strand, within Psest_0840at 912.021 kb on - strand, within Psest_0840at 912.047 kb on + strand, within Psest_0840at 912.047 kb on + strand, within Psest_0840at 912.047 kb on + strand, within Psest_0840at 912.047 kb on + strand, within Psest_0840at 912.047 kb on + strand, within Psest_0840at 912.047 kb on + strand, within Psest_0840at 912.047 kb on + strand, within Psest_0840at 912.048 kb on - strand, within Psest_0840at 912.048 kb on - strand, within Psest_0840at 912.048 kb on - strand, within Psest_0840at 912.048 kb on - strand, within Psest_0840at 912.048 kb on - strand, within Psest_0840at 912.048 kb on - strand, within Psest_0840at 912.048 kb on - strand, within Psest_0840at 912.048 kb on - strand, within Psest_0840at 912.049 kb on + strand, within Psest_0840at 912.301 kb on + strandat 912.301 kb on + strandat 912.301 kb on + strandat 912.302 kb on - strandat 912.302 kb on - strandat 912.306 kb on - strandat 912.591 kb on + strand, within Psest_0842at 912.768 kb on + strand, within Psest_0842at 913.176 kb on + strandat 913.342 kb on + strandat 913.343 kb on - strandat 913.343 kb on - strandat 913.343 kb on - strandat 913.359 kb on - strandat 913.522 kb on + strand, within Psest_0843at 913.522 kb on + strand, within Psest_0843at 913.522 kb on + strand, within Psest_0843at 913.522 kb on + strand, within Psest_0843at 913.522 kb on + strand, within Psest_0843at 913.523 kb on - strand, within Psest_0843at 913.523 kb on - strand, within Psest_0843at 913.523 kb on - strand, within Psest_0843at 913.523 kb on - strand, within Psest_0843at 913.523 kb on - strand, within Psest_0843at 913.523 kb on - strand, within Psest_0843at 913.523 kb on - strand, within Psest_0843at 913.608 kb on + strand, within Psest_0843at 913.608 kb on + strand, within Psest_0843at 913.609 kb on - strand, within Psest_0843at 913.609 kb on - strand, within Psest_0843at 913.610 kb on + strand, within Psest_0843at 913.610 kb on + strand, within Psest_0843at 913.610 kb on + strand, within Psest_0843at 913.610 kb on + strand, within Psest_0843at 913.610 kb on + strand, within Psest_0843at 913.610 kb on + strand, within Psest_0843at 913.610 kb on + strand, within Psest_0843at 913.610 kb on + strand, within Psest_0843at 913.610 kb on + strand, within Psest_0843at 913.611 kb on - strand, within Psest_0843at 913.611 kb on - strand, within Psest_0843at 913.611 kb on - strand, within Psest_0843at 913.611 kb on - strand, within Psest_0843at 913.611 kb on - strand, within Psest_0843at 913.611 kb on - strand, within Psest_0843at 913.611 kb on - strand, within Psest_0843at 913.611 kb on - strand, within Psest_0843at 913.611 kb on - strand, within Psest_0843at 913.897 kb on + strand, within Psest_0843at 913.898 kb on - strand, within Psest_0843at 914.048 kb on + strand, within Psest_0843at 914.048 kb on + strand, within Psest_0843at 914.049 kb on - strand, within Psest_0843at 914.049 kb on - strand, within Psest_0843at 914.049 kb on - strand, within Psest_0843at 914.049 kb on - strand, within Psest_0843at 914.049 kb on - strand, within Psest_0843

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
remove
911,513 + Psest_0840 0.63 +0.1
911,514 - Psest_0840 0.63 -1.0
911,828 + Psest_0840 0.79 -0.8
911,828 + Psest_0840 0.79 -1.6
911,828 + Psest_0840 0.79 +0.8
911,829 - Psest_0840 0.79 +1.3
911,829 - Psest_0840 0.79 +0.2
911,933 + Psest_0840 0.84 -0.3
911,936 + Psest_0840 0.84 -0.3
911,936 + Psest_0840 0.84 +0.2
911,937 - Psest_0840 0.84 +0.5
911,937 - Psest_0840 0.84 +0.3
911,937 - Psest_0840 0.84 -0.5
912,020 + Psest_0840 0.88 -0.2
912,020 + Psest_0840 0.88 -0.9
912,020 + Psest_0840 0.88 +0.4
912,021 - Psest_0840 0.88 -1.8
912,047 + Psest_0840 0.90 +0.4
912,047 + Psest_0840 0.90 -0.1
912,047 + Psest_0840 0.90 +0.3
912,047 + Psest_0840 0.90 +1.2
912,047 + Psest_0840 0.90 -0.7
912,047 + Psest_0840 0.90 -1.5
912,047 + Psest_0840 0.90 +0.1
912,048 - Psest_0840 0.90 -2.3
912,048 - Psest_0840 0.90 -2.1
912,048 - Psest_0840 0.90 +0.5
912,048 - Psest_0840 0.90 +1.0
912,048 - Psest_0840 0.90 +2.5
912,048 - Psest_0840 0.90 -1.5
912,048 - Psest_0840 0.90 +0.6
912,048 - Psest_0840 0.90 +0.1
912,049 + Psest_0840 0.90 +1.1
912,301 + -0.7
912,301 + +1.9
912,301 + +1.5
912,302 - -0.3
912,302 - +0.4
912,306 - -0.4
912,591 + Psest_0842 0.16 -0.0
912,768 + Psest_0842 0.41 +0.7
913,176 + -1.5
913,342 + -1.3
913,343 - -1.3
913,343 - -0.2
913,343 - +0.2
913,359 - -1.3
913,522 + Psest_0843 0.21 -2.3
913,522 + Psest_0843 0.21 +0.3
913,522 + Psest_0843 0.21 -2.0
913,522 + Psest_0843 0.21 -1.9
913,522 + Psest_0843 0.21 -0.1
913,523 - Psest_0843 0.21 -2.5
913,523 - Psest_0843 0.21 -0.3
913,523 - Psest_0843 0.21 -3.2
913,523 - Psest_0843 0.21 -2.0
913,523 - Psest_0843 0.21 -1.7
913,523 - Psest_0843 0.21 -2.0
913,523 - Psest_0843 0.21 -3.5
913,608 + Psest_0843 0.28 -2.4
913,608 + Psest_0843 0.28 -1.0
913,609 - Psest_0843 0.28 -0.1
913,609 - Psest_0843 0.28 -1.4
913,610 + Psest_0843 0.28 -2.0
913,610 + Psest_0843 0.28 -2.9
913,610 + Psest_0843 0.28 -2.2
913,610 + Psest_0843 0.28 -2.2
913,610 + Psest_0843 0.28 -2.4
913,610 + Psest_0843 0.28 -1.5
913,610 + Psest_0843 0.28 -1.4
913,610 + Psest_0843 0.28 -1.4
913,610 + Psest_0843 0.28 -1.0
913,611 - Psest_0843 0.28 -0.1
913,611 - Psest_0843 0.28 -0.3
913,611 - Psest_0843 0.28 -1.1
913,611 - Psest_0843 0.28 -2.5
913,611 - Psest_0843 0.28 -1.4
913,611 - Psest_0843 0.28 -2.4
913,611 - Psest_0843 0.28 -1.5
913,611 - Psest_0843 0.28 -2.4
913,611 - Psest_0843 0.28 -2.1
913,897 + Psest_0843 0.49 -2.2
913,898 - Psest_0843 0.49 -2.4
914,048 + Psest_0843 0.60 -1.2
914,048 + Psest_0843 0.60 -0.4
914,049 - Psest_0843 0.60 -0.9
914,049 - Psest_0843 0.60 -2.5
914,049 - Psest_0843 0.60 -1.9
914,049 - Psest_0843 0.60 -0.9
914,049 - Psest_0843 0.60 -2.5

Or see this region's nucleotide sequence