Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0831 and Psest_0832 overlap by 4 nucleotides Psest_0832 and Psest_0833 are separated by 145 nucleotides Psest_0833 and Psest_0834 are separated by 73 nucleotides Psest_0834 and Psest_0835 are separated by 192 nucleotides
Psest_0831: Psest_0831 - hypothetical protein, at 902,892 to 903,410
_0831
Psest_0832: Psest_0832 - iron-sulfur cluster repair di-iron protein, at 903,407 to 904,126
_0832
Psest_0833: Psest_0833 - Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains, at 904,272 to 905,801
_0833
Psest_0834: Psest_0834 - hypothetical protein, at 905,875 to 906,084
_0834
Psest_0835: Psest_0835 - Collagenase and related proteases, at 906,277 to 907,272
_0835
Position (kb)
904
905
906 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 903.400 kb on + strand at 903.400 kb on + strand at 903.400 kb on + strand at 903.485 kb on + strand, within Psest_0832 at 903.485 kb on + strand, within Psest_0832 at 903.485 kb on + strand, within Psest_0832 at 903.485 kb on + strand, within Psest_0832 at 903.485 kb on + strand, within Psest_0832 at 903.485 kb on + strand, within Psest_0832 at 903.486 kb on - strand, within Psest_0832 at 903.486 kb on - strand, within Psest_0832 at 903.486 kb on - strand, within Psest_0832 at 903.486 kb on - strand, within Psest_0832 at 903.486 kb on - strand, within Psest_0832 at 903.486 kb on - strand, within Psest_0832 at 903.486 kb on - strand, within Psest_0832 at 903.486 kb on - strand, within Psest_0832 at 903.486 kb on - strand, within Psest_0832 at 903.486 kb on - strand, within Psest_0832 at 903.486 kb on - strand, within Psest_0832 at 903.486 kb on - strand, within Psest_0832 at 903.486 kb on - strand, within Psest_0832 at 903.486 kb on - strand, within Psest_0832 at 903.562 kb on + strand, within Psest_0832 at 903.562 kb on + strand, within Psest_0832 at 903.562 kb on + strand, within Psest_0832 at 903.586 kb on + strand, within Psest_0832 at 903.645 kb on + strand, within Psest_0832 at 903.888 kb on + strand, within Psest_0832 at 904.017 kb on - strand, within Psest_0832 at 904.017 kb on - strand, within Psest_0832 at 904.017 kb on - strand, within Psest_0832 at 904.058 kb on + strand at 904.059 kb on - strand at 904.059 kb on - strand at 904.168 kb on - strand at 904.239 kb on - strand at 904.552 kb on - strand, within Psest_0833 at 904.620 kb on + strand, within Psest_0833 at 904.621 kb on - strand, within Psest_0833 at 904.993 kb on + strand, within Psest_0833 at 904.993 kb on + strand, within Psest_0833 at 904.993 kb on + strand, within Psest_0833 at 904.993 kb on + strand, within Psest_0833 at 904.994 kb on - strand, within Psest_0833 at 904.994 kb on - strand, within Psest_0833 at 905.171 kb on + strand, within Psest_0833 at 905.171 kb on + strand, within Psest_0833 at 905.873 kb on + strand at 905.873 kb on + strand at 905.874 kb on - strand at 905.874 kb on - strand at 905.874 kb on - strand at 906.254 kb on + strand at 906.267 kb on - strand at 906.267 kb on - strand at 906.349 kb on + strand at 906.349 kb on + strand at 906.349 kb on + strand at 906.349 kb on + strand at 906.349 kb on + strand at 906.349 kb on + strand at 906.349 kb on + strand at 906.349 kb on + strand at 906.349 kb on + strand at 906.349 kb on + strand at 906.349 kb on + strand at 906.350 kb on - strand at 906.350 kb on - strand at 906.350 kb on - strand at 906.350 kb on - strand at 906.350 kb on - strand at 906.350 kb on - strand at 906.350 kb on - strand at 906.350 kb on - strand at 906.350 kb on - strand at 906.350 kb on - strand at 906.350 kb on - strand at 906.350 kb on - strand at 906.350 kb on - strand at 906.350 kb on - strand at 906.350 kb on - strand at 906.395 kb on + strand, within Psest_0835 at 906.460 kb on + strand, within Psest_0835 at 906.460 kb on + strand, within Psest_0835 at 906.460 kb on + strand, within Psest_0835 at 906.460 kb on + strand, within Psest_0835 at 906.460 kb on + strand, within Psest_0835 at 906.460 kb on + strand, within Psest_0835 at 906.460 kb on + strand, within Psest_0835 at 906.460 kb on + strand, within Psest_0835 at 906.460 kb on + strand, within Psest_0835 at 906.460 kb on + strand, within Psest_0835 at 906.460 kb on + strand, within Psest_0835 at 906.460 kb on + strand, within Psest_0835 at 906.460 kb on + strand, within Psest_0835 at 906.460 kb on + strand, within Psest_0835 at 906.460 kb on + strand, within Psest_0835 at 906.460 kb on + strand, within Psest_0835 at 906.460 kb on + strand, within Psest_0835 at 906.461 kb on - strand, within Psest_0835 at 906.461 kb on - strand, within Psest_0835 at 906.461 kb on - strand, within Psest_0835 at 906.461 kb on - strand, within Psest_0835 at 906.461 kb on - strand, within Psest_0835 at 906.461 kb on - strand, within Psest_0835 at 906.461 kb on - strand, within Psest_0835 at 906.461 kb on - strand, within Psest_0835 at 906.461 kb on - strand, within Psest_0835 at 906.461 kb on - strand, within Psest_0835 at 906.461 kb on - strand, within Psest_0835 at 906.461 kb on - strand, within Psest_0835 at 906.461 kb on - strand, within Psest_0835 at 906.461 kb on - strand, within Psest_0835 at 906.461 kb on - strand, within Psest_0835 at 906.461 kb on - strand, within Psest_0835 at 906.461 kb on - strand, within Psest_0835 at 906.461 kb on - strand, within Psest_0835 at 906.461 kb on - strand, within Psest_0835 at 906.461 kb on - strand, within Psest_0835 at 906.461 kb on - strand, within Psest_0835 at 906.461 kb on - strand, within Psest_0835 at 906.461 kb on - strand, within Psest_0835 at 906.461 kb on - strand, within Psest_0835 at 906.461 kb on - strand, within Psest_0835 at 906.461 kb on - strand, within Psest_0835 at 906.461 kb on - strand, within Psest_0835 at 906.463 kb on - strand, within Psest_0835 at 906.474 kb on + strand, within Psest_0835 at 906.474 kb on + strand, within Psest_0835 at 906.475 kb on - strand, within Psest_0835 at 906.475 kb on - strand, within Psest_0835 at 906.475 kb on - strand, within Psest_0835 at 906.475 kb on - strand, within Psest_0835 at 906.475 kb on - strand, within Psest_0835 at 906.475 kb on - strand, within Psest_0835 at 906.478 kb on + strand, within Psest_0835 at 906.479 kb on - strand, within Psest_0835 at 906.662 kb on - strand, within Psest_0835
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 903,400 + +0.9 903,400 + +0.2 903,400 + -0.4 903,485 + Psest_0832 0.11 -1.3 903,485 + Psest_0832 0.11 +0.6 903,485 + Psest_0832 0.11 -0.2 903,485 + Psest_0832 0.11 -0.4 903,485 + Psest_0832 0.11 -0.1 903,485 + Psest_0832 0.11 +1.2 903,486 - Psest_0832 0.11 +0.2 903,486 - Psest_0832 0.11 -1.1 903,486 - Psest_0832 0.11 -0.4 903,486 - Psest_0832 0.11 -2.9 903,486 - Psest_0832 0.11 -0.0 903,486 - Psest_0832 0.11 -1.8 903,486 - Psest_0832 0.11 -0.8 903,486 - Psest_0832 0.11 -0.2 903,486 - Psest_0832 0.11 -0.6 903,486 - Psest_0832 0.11 +0.0 903,486 - Psest_0832 0.11 -0.2 903,486 - Psest_0832 0.11 -1.7 903,486 - Psest_0832 0.11 -1.9 903,486 - Psest_0832 0.11 -1.0 903,562 + Psest_0832 0.22 -1.6 903,562 + Psest_0832 0.22 -1.1 903,562 + Psest_0832 0.22 +0.3 903,586 + Psest_0832 0.25 +0.3 903,645 + Psest_0832 0.33 -0.6 903,888 + Psest_0832 0.67 -0.6 904,017 - Psest_0832 0.85 -0.2 904,017 - Psest_0832 0.85 -0.6 904,017 - Psest_0832 0.85 -0.7 904,058 + -0.5 904,059 - -0.1 904,059 - +0.4 904,168 - -0.4 904,239 - -0.5 904,552 - Psest_0833 0.18 -0.7 904,620 + Psest_0833 0.23 -0.9 904,621 - Psest_0833 0.23 -0.7 904,993 + Psest_0833 0.47 +0.9 904,993 + Psest_0833 0.47 -0.1 904,993 + Psest_0833 0.47 -2.3 904,993 + Psest_0833 0.47 -1.4 904,994 - Psest_0833 0.47 -2.2 904,994 - Psest_0833 0.47 -0.7 905,171 + Psest_0833 0.59 -0.2 905,171 + Psest_0833 0.59 +0.1 905,873 + +0.7 905,873 + +0.3 905,874 - +0.2 905,874 - -0.2 905,874 - -1.7 906,254 + +1.3 906,267 - -0.3 906,267 - +1.3 906,349 + -0.7 906,349 + -0.5 906,349 + -1.3 906,349 + -1.1 906,349 + +0.7 906,349 + +0.4 906,349 + -0.7 906,349 + +0.7 906,349 + +1.1 906,349 + -0.6 906,349 + -0.8 906,350 - +0.1 906,350 - -1.1 906,350 - -1.2 906,350 - -0.8 906,350 - -0.9 906,350 - -0.3 906,350 - -0.2 906,350 - +1.0 906,350 - -0.1 906,350 - -0.6 906,350 - -1.1 906,350 - +0.3 906,350 - +0.4 906,350 - -0.1 906,350 - +0.8 906,395 + Psest_0835 0.12 -0.2 906,460 + Psest_0835 0.18 -0.7 906,460 + Psest_0835 0.18 +0.4 906,460 + Psest_0835 0.18 +0.2 906,460 + Psest_0835 0.18 -0.0 906,460 + Psest_0835 0.18 -0.9 906,460 + Psest_0835 0.18 -0.7 906,460 + Psest_0835 0.18 -0.1 906,460 + Psest_0835 0.18 -0.8 906,460 + Psest_0835 0.18 -1.1 906,460 + Psest_0835 0.18 +1.3 906,460 + Psest_0835 0.18 -0.3 906,460 + Psest_0835 0.18 +0.4 906,460 + Psest_0835 0.18 +0.5 906,460 + Psest_0835 0.18 +0.4 906,460 + Psest_0835 0.18 +1.0 906,460 + Psest_0835 0.18 +0.7 906,460 + Psest_0835 0.18 +0.9 906,461 - Psest_0835 0.18 -0.5 906,461 - Psest_0835 0.18 +0.5 906,461 - Psest_0835 0.18 +1.2 906,461 - Psest_0835 0.18 +1.6 906,461 - Psest_0835 0.18 +0.7 906,461 - Psest_0835 0.18 -0.6 906,461 - Psest_0835 0.18 -1.7 906,461 - Psest_0835 0.18 +0.3 906,461 - Psest_0835 0.18 +1.8 906,461 - Psest_0835 0.18 +1.6 906,461 - Psest_0835 0.18 +1.2 906,461 - Psest_0835 0.18 -0.3 906,461 - Psest_0835 0.18 +1.1 906,461 - Psest_0835 0.18 -0.9 906,461 - Psest_0835 0.18 +0.9 906,461 - Psest_0835 0.18 +0.6 906,461 - Psest_0835 0.18 -1.5 906,461 - Psest_0835 0.18 -0.0 906,461 - Psest_0835 0.18 -0.5 906,461 - Psest_0835 0.18 +0.0 906,461 - Psest_0835 0.18 +0.4 906,461 - Psest_0835 0.18 +0.2 906,461 - Psest_0835 0.18 -0.0 906,461 - Psest_0835 0.18 -1.3 906,461 - Psest_0835 0.18 +0.5 906,461 - Psest_0835 0.18 +1.5 906,461 - Psest_0835 0.18 +0.9 906,463 - Psest_0835 0.19 -2.1 906,474 + Psest_0835 0.20 +1.0 906,474 + Psest_0835 0.20 -0.0 906,475 - Psest_0835 0.20 -1.6 906,475 - Psest_0835 0.20 -2.3 906,475 - Psest_0835 0.20 +0.9 906,475 - Psest_0835 0.20 +0.0 906,475 - Psest_0835 0.20 +0.2 906,475 - Psest_0835 0.20 -0.9 906,478 + Psest_0835 0.20 +0.3 906,479 - Psest_0835 0.20 +0.9 906,662 - Psest_0835 0.39 -1.2
Or see this region's nucleotide sequence