Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0801 and Psest_0802 are separated by 10 nucleotides Psest_0802 and Psest_0803 are separated by 70 nucleotides Psest_0803 and Psest_0804 are separated by 8 nucleotides
Psest_0801: Psest_0801 - CBS-domain-containing membrane protein, at 875,814 to 876,950
_0801
Psest_0802: Psest_0802 - Transcriptional regulator, at 876,961 to 877,821
_0802
Psest_0803: Psest_0803 - prepilin-type N-terminal cleavage/methylation domain, at 877,892 to 878,419
_0803
Psest_0804: Psest_0804 - hypothetical protein, at 878,428 to 881,445
_0804
Position (kb) 877
878
879 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 876.972 kb on - strand at 877.073 kb on + strand, within Psest_0802 at 877.074 kb on - strand, within Psest_0802 at 877.074 kb on - strand, within Psest_0802 at 877.082 kb on + strand, within Psest_0802 at 877.160 kb on + strand, within Psest_0802 at 877.218 kb on + strand, within Psest_0802 at 877.218 kb on + strand, within Psest_0802 at 877.218 kb on + strand, within Psest_0802 at 877.218 kb on + strand, within Psest_0802 at 877.289 kb on + strand, within Psest_0802 at 877.289 kb on + strand, within Psest_0802 at 877.289 kb on + strand, within Psest_0802 at 877.289 kb on + strand, within Psest_0802 at 877.289 kb on + strand, within Psest_0802 at 877.289 kb on + strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.295 kb on + strand, within Psest_0802 at 877.295 kb on + strand, within Psest_0802 at 877.295 kb on + strand, within Psest_0802 at 877.295 kb on + strand, within Psest_0802 at 877.295 kb on + strand, within Psest_0802 at 877.295 kb on + strand, within Psest_0802 at 877.296 kb on - strand, within Psest_0802 at 877.296 kb on - strand, within Psest_0802 at 877.296 kb on - strand, within Psest_0802 at 877.374 kb on - strand, within Psest_0802 at 877.495 kb on + strand, within Psest_0802 at 877.622 kb on + strand, within Psest_0802 at 877.622 kb on + strand, within Psest_0802 at 877.623 kb on - strand, within Psest_0802 at 877.743 kb on + strand at 877.743 kb on + strand at 877.855 kb on + strand at 877.855 kb on + strand at 877.855 kb on + strand at 877.855 kb on + strand at 877.856 kb on - strand at 877.856 kb on - strand at 877.856 kb on - strand at 877.856 kb on - strand at 877.883 kb on + strand at 877.884 kb on - strand at 877.887 kb on + strand at 877.887 kb on + strand at 877.887 kb on + strand at 877.887 kb on + strand at 877.887 kb on + strand at 877.888 kb on - strand at 877.888 kb on - strand at 878.016 kb on - strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.262 kb on + strand, within Psest_0803 at 878.263 kb on - strand, within Psest_0803 at 878.263 kb on - strand, within Psest_0803 at 878.263 kb on - strand, within Psest_0803 at 878.263 kb on - strand, within Psest_0803 at 878.298 kb on + strand, within Psest_0803 at 878.393 kb on + strand at 878.393 kb on + strand at 878.429 kb on + strand at 878.430 kb on - strand at 878.430 kb on - strand at 878.430 kb on - strand at 878.484 kb on + strand at 878.484 kb on + strand at 878.484 kb on + strand at 878.484 kb on + strand at 878.485 kb on - strand at 878.619 kb on - strand at 878.635 kb on + strand at 878.639 kb on + strand at 878.639 kb on + strand at 878.639 kb on + strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.640 kb on - strand at 878.650 kb on - strand at 878.651 kb on + strand at 878.651 kb on + strand at 878.651 kb on + strand at 878.652 kb on - strand at 878.652 kb on - strand at 878.652 kb on - strand at 878.652 kb on - strand at 878.652 kb on - strand at 878.784 kb on - strand, within Psest_0804 at 878.784 kb on - strand, within Psest_0804 at 878.784 kb on - strand, within Psest_0804 at 878.784 kb on - strand, within Psest_0804 at 878.939 kb on + strand, within Psest_0804 at 878.939 kb on + strand, within Psest_0804 at 878.939 kb on + strand, within Psest_0804 at 878.939 kb on + strand, within Psest_0804 at 878.940 kb on - strand, within Psest_0804 at 878.940 kb on - strand, within Psest_0804 at 878.940 kb on - strand, within Psest_0804 at 878.967 kb on - strand, within Psest_0804 at 879.014 kb on + strand, within Psest_0804 at 879.015 kb on - strand, within Psest_0804 at 879.015 kb on - strand, within Psest_0804 at 879.124 kb on + strand, within Psest_0804 at 879.182 kb on + strand, within Psest_0804 at 879.294 kb on - strand, within Psest_0804
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 876,972 - +1.0 877,073 + Psest_0802 0.13 +1.1 877,074 - Psest_0802 0.13 -0.6 877,074 - Psest_0802 0.13 -1.3 877,082 + Psest_0802 0.14 +0.2 877,160 + Psest_0802 0.23 +0.3 877,218 + Psest_0802 0.30 -0.2 877,218 + Psest_0802 0.30 -0.5 877,218 + Psest_0802 0.30 +1.3 877,218 + Psest_0802 0.30 -0.4 877,289 + Psest_0802 0.38 +1.1 877,289 + Psest_0802 0.38 +1.1 877,289 + Psest_0802 0.38 -0.8 877,289 + Psest_0802 0.38 +0.6 877,289 + Psest_0802 0.38 -1.1 877,289 + Psest_0802 0.38 -0.5 877,290 - Psest_0802 0.38 -1.5 877,290 - Psest_0802 0.38 +0.6 877,290 - Psest_0802 0.38 -1.0 877,290 - Psest_0802 0.38 +0.0 877,290 - Psest_0802 0.38 -1.1 877,290 - Psest_0802 0.38 -1.8 877,290 - Psest_0802 0.38 -0.3 877,290 - Psest_0802 0.38 -0.2 877,290 - Psest_0802 0.38 +1.6 877,290 - Psest_0802 0.38 +1.0 877,295 + Psest_0802 0.39 +1.6 877,295 + Psest_0802 0.39 +1.7 877,295 + Psest_0802 0.39 -0.7 877,295 + Psest_0802 0.39 -2.1 877,295 + Psest_0802 0.39 +1.4 877,295 + Psest_0802 0.39 +0.2 877,296 - Psest_0802 0.39 -0.9 877,296 - Psest_0802 0.39 -0.4 877,296 - Psest_0802 0.39 -0.3 877,374 - Psest_0802 0.48 -0.3 877,495 + Psest_0802 0.62 -2.3 877,622 + Psest_0802 0.77 +0.8 877,622 + Psest_0802 0.77 -0.9 877,623 - Psest_0802 0.77 -1.5 877,743 + -0.6 877,743 + -0.1 877,855 + -0.6 877,855 + +0.3 877,855 + +1.8 877,855 + +1.1 877,856 - +0.1 877,856 - +0.9 877,856 - +0.2 877,856 - -0.9 877,883 + -0.7 877,884 - -2.3 877,887 + +0.1 877,887 + -0.4 877,887 + +1.3 877,887 + -0.3 877,887 + -1.0 877,888 - -0.2 877,888 - +0.7 878,016 - Psest_0803 0.23 -1.1 878,262 + Psest_0803 0.70 -0.5 878,262 + Psest_0803 0.70 +1.1 878,262 + Psest_0803 0.70 -0.0 878,262 + Psest_0803 0.70 -0.9 878,262 + Psest_0803 0.70 +0.0 878,262 + Psest_0803 0.70 +0.7 878,262 + Psest_0803 0.70 +1.4 878,263 - Psest_0803 0.70 +1.8 878,263 - Psest_0803 0.70 +0.2 878,263 - Psest_0803 0.70 +1.2 878,263 - Psest_0803 0.70 +1.0 878,298 + Psest_0803 0.77 +1.5 878,393 + -1.7 878,393 + -1.1 878,429 + +0.4 878,430 - +1.1 878,430 - -1.5 878,430 - +0.8 878,484 + -0.1 878,484 + +0.6 878,484 + -1.0 878,484 + +1.5 878,485 - +0.2 878,619 - +1.2 878,635 + +1.1 878,639 + +0.1 878,639 + +0.4 878,639 + -3.0 878,640 - -0.5 878,640 - +0.5 878,640 - +1.1 878,640 - -0.1 878,640 - +0.2 878,640 - -1.3 878,640 - -1.1 878,640 - +0.1 878,650 - -0.6 878,651 + -0.2 878,651 + +0.1 878,651 + +0.3 878,652 - -1.9 878,652 - -0.3 878,652 - +3.5 878,652 - -0.3 878,652 - +0.6 878,784 - Psest_0804 0.12 +0.1 878,784 - Psest_0804 0.12 +0.5 878,784 - Psest_0804 0.12 -0.6 878,784 - Psest_0804 0.12 +0.8 878,939 + Psest_0804 0.17 -1.9 878,939 + Psest_0804 0.17 -0.3 878,939 + Psest_0804 0.17 -0.8 878,939 + Psest_0804 0.17 -0.4 878,940 - Psest_0804 0.17 -0.6 878,940 - Psest_0804 0.17 -0.0 878,940 - Psest_0804 0.17 +1.8 878,967 - Psest_0804 0.18 -2.4 879,014 + Psest_0804 0.19 -0.2 879,015 - Psest_0804 0.19 -0.9 879,015 - Psest_0804 0.19 +0.3 879,124 + Psest_0804 0.23 -0.3 879,182 + Psest_0804 0.25 +1.3 879,294 - Psest_0804 0.29 +1.1
Or see this region's nucleotide sequence