Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4328

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4327 and Psest_4328 are separated by 88 nucleotidesPsest_4328 and Psest_4329 overlap by 4 nucleotidesPsest_4329 and Psest_4330 are separated by 4 nucleotides Psest_4327: Psest_4327 - cytochrome c oxidase, subunit I, at 4,527,209 to 4,528,846 _4327 Psest_4328: Psest_4328 - Cytochrome oxidase assembly factor, at 4,528,935 to 4,529,510 _4328 Psest_4329: Psest_4329 - Heme/copper-type cytochrome/quinol oxidase, subunit 3, at 4,529,507 to 4,530,403 _4329 Psest_4330: Psest_4330 - Protein of unknown function (DUF2909)., at 4,530,408 to 4,530,611 _4330 Position (kb) 4528 4529 4530Strain fitness (log2 ratio) -2 -1 0 1 2at 4527.963 kb on + strand, within Psest_4327at 4527.963 kb on + strand, within Psest_4327at 4527.963 kb on + strand, within Psest_4327at 4527.963 kb on + strand, within Psest_4327at 4527.963 kb on + strand, within Psest_4327at 4527.964 kb on - strand, within Psest_4327at 4527.964 kb on - strand, within Psest_4327at 4527.992 kb on + strand, within Psest_4327at 4527.992 kb on + strand, within Psest_4327at 4527.992 kb on + strand, within Psest_4327at 4527.992 kb on + strand, within Psest_4327at 4527.992 kb on + strand, within Psest_4327at 4527.992 kb on + strand, within Psest_4327at 4527.992 kb on + strand, within Psest_4327at 4527.992 kb on + strand, within Psest_4327at 4527.992 kb on + strand, within Psest_4327at 4527.993 kb on - strand, within Psest_4327at 4527.993 kb on - strand, within Psest_4327at 4527.993 kb on - strand, within Psest_4327at 4527.993 kb on - strand, within Psest_4327at 4527.993 kb on - strand, within Psest_4327at 4527.993 kb on - strand, within Psest_4327at 4527.993 kb on - strand, within Psest_4327at 4527.993 kb on - strand, within Psest_4327at 4528.083 kb on - strand, within Psest_4327at 4528.178 kb on + strand, within Psest_4327at 4528.178 kb on + strand, within Psest_4327at 4528.178 kb on + strand, within Psest_4327at 4528.178 kb on + strand, within Psest_4327at 4528.178 kb on + strand, within Psest_4327at 4528.179 kb on - strand, within Psest_4327at 4528.370 kb on + strand, within Psest_4327at 4528.370 kb on + strand, within Psest_4327at 4528.370 kb on + strand, within Psest_4327at 4528.370 kb on + strand, within Psest_4327at 4528.370 kb on + strand, within Psest_4327at 4528.370 kb on + strand, within Psest_4327at 4528.370 kb on + strand, within Psest_4327at 4528.370 kb on + strand, within Psest_4327at 4528.370 kb on + strand, within Psest_4327at 4528.371 kb on - strand, within Psest_4327at 4528.371 kb on - strand, within Psest_4327at 4528.371 kb on - strand, within Psest_4327at 4528.371 kb on - strand, within Psest_4327at 4528.371 kb on - strand, within Psest_4327at 4528.371 kb on - strand, within Psest_4327at 4528.371 kb on - strand, within Psest_4327at 4528.371 kb on - strand, within Psest_4327at 4528.371 kb on - strand, within Psest_4327at 4528.394 kb on + strand, within Psest_4327at 4528.394 kb on + strand, within Psest_4327at 4528.394 kb on + strand, within Psest_4327at 4528.394 kb on + strand, within Psest_4327at 4528.395 kb on - strand, within Psest_4327at 4528.395 kb on - strand, within Psest_4327at 4528.395 kb on - strand, within Psest_4327at 4528.439 kb on + strand, within Psest_4327at 4528.440 kb on - strand, within Psest_4327at 4528.440 kb on - strand, within Psest_4327at 4528.440 kb on - strand, within Psest_4327at 4528.442 kb on + strand, within Psest_4327at 4528.442 kb on + strand, within Psest_4327at 4528.442 kb on + strand, within Psest_4327at 4528.443 kb on - strand, within Psest_4327at 4528.443 kb on - strand, within Psest_4327at 4528.472 kb on + strand, within Psest_4327at 4528.472 kb on + strand, within Psest_4327at 4528.472 kb on + strand, within Psest_4327at 4528.472 kb on + strand, within Psest_4327at 4528.472 kb on + strand, within Psest_4327at 4528.473 kb on - strand, within Psest_4327at 4528.473 kb on - strand, within Psest_4327at 4528.473 kb on - strand, within Psest_4327at 4528.473 kb on - strand, within Psest_4327at 4528.473 kb on - strand, within Psest_4327at 4528.473 kb on - strand, within Psest_4327at 4528.473 kb on - strand, within Psest_4327at 4528.473 kb on - strand, within Psest_4327at 4528.473 kb on - strand, within Psest_4327at 4528.473 kb on - strand, within Psest_4327at 4528.473 kb on - strand, within Psest_4327at 4528.473 kb on - strand, within Psest_4327at 4528.586 kb on + strand, within Psest_4327at 4528.587 kb on - strand, within Psest_4327at 4528.636 kb on + strand, within Psest_4327at 4528.636 kb on + strand, within Psest_4327at 4528.636 kb on + strand, within Psest_4327at 4528.636 kb on + strand, within Psest_4327at 4528.637 kb on - strand, within Psest_4327at 4528.637 kb on - strand, within Psest_4327at 4529.028 kb on + strand, within Psest_4328at 4529.028 kb on + strand, within Psest_4328at 4529.028 kb on + strand, within Psest_4328at 4529.029 kb on - strand, within Psest_4328at 4529.229 kb on + strand, within Psest_4328at 4529.229 kb on + strand, within Psest_4328at 4529.229 kb on + strand, within Psest_4328at 4529.230 kb on - strand, within Psest_4328at 4529.230 kb on - strand, within Psest_4328at 4529.427 kb on + strand, within Psest_4328at 4529.427 kb on + strand, within Psest_4328at 4529.428 kb on - strand, within Psest_4328at 4529.534 kb on + strandat 4529.537 kb on + strandat 4529.537 kb on + strandat 4529.537 kb on + strandat 4529.537 kb on + strandat 4529.538 kb on - strandat 4529.538 kb on - strandat 4529.538 kb on - strandat 4529.538 kb on - strandat 4529.541 kb on + strandat 4529.542 kb on - strandat 4529.597 kb on + strand, within Psest_4329at 4529.690 kb on + strand, within Psest_4329at 4529.690 kb on + strand, within Psest_4329at 4529.690 kb on + strand, within Psest_4329at 4529.691 kb on - strand, within Psest_4329at 4529.691 kb on - strand, within Psest_4329at 4529.691 kb on - strand, within Psest_4329at 4529.691 kb on - strand, within Psest_4329at 4529.691 kb on - strand, within Psest_4329at 4529.691 kb on - strand, within Psest_4329at 4529.691 kb on - strand, within Psest_4329at 4529.744 kb on + strand, within Psest_4329at 4529.744 kb on + strand, within Psest_4329at 4529.745 kb on - strand, within Psest_4329at 4529.745 kb on - strand, within Psest_4329at 4529.840 kb on + strand, within Psest_4329at 4529.840 kb on + strand, within Psest_4329at 4529.840 kb on + strand, within Psest_4329at 4529.840 kb on + strand, within Psest_4329at 4529.841 kb on - strand, within Psest_4329at 4529.841 kb on - strand, within Psest_4329at 4529.841 kb on - strand, within Psest_4329at 4529.841 kb on - strand, within Psest_4329at 4529.841 kb on - strand, within Psest_4329at 4529.841 kb on - strand, within Psest_4329at 4529.921 kb on + strand, within Psest_4329at 4530.111 kb on + strand, within Psest_4329at 4530.112 kb on - strand, within Psest_4329at 4530.112 kb on - strand, within Psest_4329at 4530.152 kb on + strand, within Psest_4329at 4530.152 kb on + strand, within Psest_4329at 4530.152 kb on + strand, within Psest_4329at 4530.152 kb on + strand, within Psest_4329at 4530.152 kb on + strand, within Psest_4329at 4530.152 kb on + strand, within Psest_4329at 4530.153 kb on - strand, within Psest_4329at 4530.153 kb on - strand, within Psest_4329at 4530.153 kb on - strand, within Psest_4329at 4530.153 kb on - strand, within Psest_4329at 4530.165 kb on - strand, within Psest_4329at 4530.165 kb on - strand, within Psest_4329at 4530.165 kb on - strand, within Psest_4329at 4530.165 kb on - strand, within Psest_4329at 4530.200 kb on + strand, within Psest_4329at 4530.200 kb on + strand, within Psest_4329at 4530.200 kb on + strand, within Psest_4329at 4530.200 kb on + strand, within Psest_4329at 4530.201 kb on - strand, within Psest_4329at 4530.201 kb on - strand, within Psest_4329at 4530.392 kb on + strandat 4530.392 kb on + strandat 4530.392 kb on + strandat 4530.392 kb on + strandat 4530.392 kb on + strandat 4530.392 kb on + strandat 4530.393 kb on - strandat 4530.402 kb on - strandat 4530.402 kb on - strandat 4530.402 kb on - strandat 4530.402 kb on - strandat 4530.442 kb on + strand, within Psest_4330at 4530.442 kb on + strand, within Psest_4330at 4530.443 kb on - strand, within Psest_4330at 4530.443 kb on - strand, within Psest_4330at 4530.443 kb on - strand, within Psest_4330at 4530.443 kb on - strand, within Psest_4330at 4530.443 kb on - strand, within Psest_4330at 4530.443 kb on - strand, within Psest_4330at 4530.443 kb on - strand, within Psest_4330

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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4,527,963 + Psest_4327 0.46 -1.0
4,527,963 + Psest_4327 0.46 -1.2
4,527,963 + Psest_4327 0.46 -1.0
4,527,963 + Psest_4327 0.46 +1.3
4,527,963 + Psest_4327 0.46 +1.2
4,527,964 - Psest_4327 0.46 +0.6
4,527,964 - Psest_4327 0.46 -1.7
4,527,992 + Psest_4327 0.48 +0.4
4,527,992 + Psest_4327 0.48 -0.2
4,527,992 + Psest_4327 0.48 +1.0
4,527,992 + Psest_4327 0.48 +0.1
4,527,992 + Psest_4327 0.48 -0.7
4,527,992 + Psest_4327 0.48 +1.3
4,527,992 + Psest_4327 0.48 -1.7
4,527,992 + Psest_4327 0.48 +1.9
4,527,992 + Psest_4327 0.48 +0.4
4,527,993 - Psest_4327 0.48 -0.2
4,527,993 - Psest_4327 0.48 -1.9
4,527,993 - Psest_4327 0.48 +0.7
4,527,993 - Psest_4327 0.48 +0.5
4,527,993 - Psest_4327 0.48 -1.0
4,527,993 - Psest_4327 0.48 +0.5
4,527,993 - Psest_4327 0.48 +0.2
4,527,993 - Psest_4327 0.48 +0.5
4,528,083 - Psest_4327 0.53 +0.5
4,528,178 + Psest_4327 0.59 +2.1
4,528,178 + Psest_4327 0.59 +1.8
4,528,178 + Psest_4327 0.59 +0.8
4,528,178 + Psest_4327 0.59 -0.7
4,528,178 + Psest_4327 0.59 +0.0
4,528,179 - Psest_4327 0.59 -0.9
4,528,370 + Psest_4327 0.71 -0.2
4,528,370 + Psest_4327 0.71 +0.8
4,528,370 + Psest_4327 0.71 -0.9
4,528,370 + Psest_4327 0.71 -1.1
4,528,370 + Psest_4327 0.71 -0.1
4,528,370 + Psest_4327 0.71 -0.1
4,528,370 + Psest_4327 0.71 -1.0
4,528,370 + Psest_4327 0.71 +0.0
4,528,370 + Psest_4327 0.71 -2.2
4,528,371 - Psest_4327 0.71 -1.2
4,528,371 - Psest_4327 0.71 +0.3
4,528,371 - Psest_4327 0.71 -1.5
4,528,371 - Psest_4327 0.71 +0.5
4,528,371 - Psest_4327 0.71 -0.4
4,528,371 - Psest_4327 0.71 -1.0
4,528,371 - Psest_4327 0.71 +1.8
4,528,371 - Psest_4327 0.71 -0.2
4,528,371 - Psest_4327 0.71 -0.7
4,528,394 + Psest_4327 0.72 -0.8
4,528,394 + Psest_4327 0.72 +0.3
4,528,394 + Psest_4327 0.72 -0.5
4,528,394 + Psest_4327 0.72 +2.7
4,528,395 - Psest_4327 0.72 +2.3
4,528,395 - Psest_4327 0.72 -1.6
4,528,395 - Psest_4327 0.72 -0.9
4,528,439 + Psest_4327 0.75 -0.9
4,528,440 - Psest_4327 0.75 +0.9
4,528,440 - Psest_4327 0.75 -0.0
4,528,440 - Psest_4327 0.75 -0.2
4,528,442 + Psest_4327 0.75 -0.5
4,528,442 + Psest_4327 0.75 -1.1
4,528,442 + Psest_4327 0.75 +1.3
4,528,443 - Psest_4327 0.75 -1.2
4,528,443 - Psest_4327 0.75 +0.8
4,528,472 + Psest_4327 0.77 -2.1
4,528,472 + Psest_4327 0.77 -1.1
4,528,472 + Psest_4327 0.77 -0.1
4,528,472 + Psest_4327 0.77 -0.3
4,528,472 + Psest_4327 0.77 +0.1
4,528,473 - Psest_4327 0.77 -0.4
4,528,473 - Psest_4327 0.77 -1.3
4,528,473 - Psest_4327 0.77 +0.0
4,528,473 - Psest_4327 0.77 +0.4
4,528,473 - Psest_4327 0.77 +1.0
4,528,473 - Psest_4327 0.77 +0.0
4,528,473 - Psest_4327 0.77 -0.6
4,528,473 - Psest_4327 0.77 -1.4
4,528,473 - Psest_4327 0.77 -1.2
4,528,473 - Psest_4327 0.77 -0.9
4,528,473 - Psest_4327 0.77 +0.9
4,528,473 - Psest_4327 0.77 -0.9
4,528,586 + Psest_4327 0.84 +0.5
4,528,587 - Psest_4327 0.84 +2.6
4,528,636 + Psest_4327 0.87 +0.4
4,528,636 + Psest_4327 0.87 -0.5
4,528,636 + Psest_4327 0.87 -1.6
4,528,636 + Psest_4327 0.87 -0.6
4,528,637 - Psest_4327 0.87 -0.5
4,528,637 - Psest_4327 0.87 +0.2
4,529,028 + Psest_4328 0.16 -0.6
4,529,028 + Psest_4328 0.16 -0.9
4,529,028 + Psest_4328 0.16 -1.9
4,529,029 - Psest_4328 0.16 -0.2
4,529,229 + Psest_4328 0.51 -1.5
4,529,229 + Psest_4328 0.51 -0.8
4,529,229 + Psest_4328 0.51 -1.2
4,529,230 - Psest_4328 0.51 -1.1
4,529,230 - Psest_4328 0.51 -0.6
4,529,427 + Psest_4328 0.85 -1.6
4,529,427 + Psest_4328 0.85 +0.3
4,529,428 - Psest_4328 0.86 +0.7
4,529,534 + +0.5
4,529,537 + -1.0
4,529,537 + -0.5
4,529,537 + -0.5
4,529,537 + -0.2
4,529,538 - -1.8
4,529,538 - +0.4
4,529,538 - +1.5
4,529,538 - -1.2
4,529,541 + +0.8
4,529,542 - +0.8
4,529,597 + Psest_4329 0.10 +1.0
4,529,690 + Psest_4329 0.20 -0.5
4,529,690 + Psest_4329 0.20 -0.2
4,529,690 + Psest_4329 0.20 +0.1
4,529,691 - Psest_4329 0.21 -2.4
4,529,691 - Psest_4329 0.21 -0.8
4,529,691 - Psest_4329 0.21 -0.9
4,529,691 - Psest_4329 0.21 +0.2
4,529,691 - Psest_4329 0.21 +0.0
4,529,691 - Psest_4329 0.21 +1.1
4,529,691 - Psest_4329 0.21 -0.0
4,529,744 + Psest_4329 0.26 +1.2
4,529,744 + Psest_4329 0.26 -0.8
4,529,745 - Psest_4329 0.27 +1.5
4,529,745 - Psest_4329 0.27 +0.8
4,529,840 + Psest_4329 0.37 -0.6
4,529,840 + Psest_4329 0.37 -1.2
4,529,840 + Psest_4329 0.37 +0.5
4,529,840 + Psest_4329 0.37 +0.6
4,529,841 - Psest_4329 0.37 -1.0
4,529,841 - Psest_4329 0.37 -1.7
4,529,841 - Psest_4329 0.37 -0.9
4,529,841 - Psest_4329 0.37 -0.3
4,529,841 - Psest_4329 0.37 -0.4
4,529,841 - Psest_4329 0.37 +0.5
4,529,921 + Psest_4329 0.46 +0.2
4,530,111 + Psest_4329 0.67 +0.2
4,530,112 - Psest_4329 0.67 +0.2
4,530,112 - Psest_4329 0.67 -1.3
4,530,152 + Psest_4329 0.72 -0.7
4,530,152 + Psest_4329 0.72 +0.2
4,530,152 + Psest_4329 0.72 -0.3
4,530,152 + Psest_4329 0.72 -0.4
4,530,152 + Psest_4329 0.72 +1.5
4,530,152 + Psest_4329 0.72 -2.0
4,530,153 - Psest_4329 0.72 +0.6
4,530,153 - Psest_4329 0.72 -1.8
4,530,153 - Psest_4329 0.72 +0.5
4,530,153 - Psest_4329 0.72 -2.1
4,530,165 - Psest_4329 0.73 +1.1
4,530,165 - Psest_4329 0.73 -0.5
4,530,165 - Psest_4329 0.73 +0.6
4,530,165 - Psest_4329 0.73 -0.7
4,530,200 + Psest_4329 0.77 -2.0
4,530,200 + Psest_4329 0.77 -2.5
4,530,200 + Psest_4329 0.77 +1.3
4,530,200 + Psest_4329 0.77 +0.0
4,530,201 - Psest_4329 0.77 +0.3
4,530,201 - Psest_4329 0.77 +2.3
4,530,392 + +0.2
4,530,392 + +0.9
4,530,392 + -1.0
4,530,392 + +0.2
4,530,392 + +1.6
4,530,392 + -1.6
4,530,393 - -1.9
4,530,402 - -0.6
4,530,402 - -2.0
4,530,402 - +0.4
4,530,402 - +0.1
4,530,442 + Psest_4330 0.17 +0.3
4,530,442 + Psest_4330 0.17 -0.7
4,530,443 - Psest_4330 0.17 +0.6
4,530,443 - Psest_4330 0.17 -1.5
4,530,443 - Psest_4330 0.17 -1.7
4,530,443 - Psest_4330 0.17 -1.0
4,530,443 - Psest_4330 0.17 +2.1
4,530,443 - Psest_4330 0.17 +1.9
4,530,443 - Psest_4330 0.17 +0.4

Or see this region's nucleotide sequence