Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4201

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4199 and Psest_4200 are separated by 3 nucleotidesPsest_4200 and Psest_4201 overlap by 1 nucleotidesPsest_4201 and Psest_4202 are separated by 156 nucleotides Psest_4199: Psest_4199 - general secretion pathway protein H, at 4,377,050 to 4,377,619 _4199 Psest_4200: Psest_4200 - general secretion pathway protein G, at 4,377,623 to 4,378,063 _4200 Psest_4201: Psest_4201 - general secretion pathway protein F, at 4,378,063 to 4,379,277 _4201 Psest_4202: Psest_4202 - general secretory pathway protein E, at 4,379,434 to 4,380,948 _4202 Position (kb) 4378 4379 4380Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4377.185 kb on + strand, within Psest_4199at 4377.185 kb on + strand, within Psest_4199at 4377.185 kb on + strand, within Psest_4199at 4377.185 kb on + strand, within Psest_4199at 4377.185 kb on + strand, within Psest_4199at 4377.186 kb on - strand, within Psest_4199at 4377.186 kb on - strand, within Psest_4199at 4377.186 kb on - strand, within Psest_4199at 4377.186 kb on - strand, within Psest_4199at 4377.186 kb on - strand, within Psest_4199at 4377.278 kb on + strand, within Psest_4199at 4377.278 kb on + strand, within Psest_4199at 4377.278 kb on + strand, within Psest_4199at 4377.279 kb on - strand, within Psest_4199at 4377.279 kb on - strand, within Psest_4199at 4377.279 kb on - strand, within Psest_4199at 4377.638 kb on - strandat 4377.693 kb on + strand, within Psest_4200at 4377.693 kb on + strand, within Psest_4200at 4377.694 kb on - strand, within Psest_4200at 4377.729 kb on + strand, within Psest_4200at 4377.729 kb on + strand, within Psest_4200at 4377.730 kb on - strand, within Psest_4200at 4377.730 kb on - strand, within Psest_4200at 4377.858 kb on + strand, within Psest_4200at 4377.858 kb on + strand, within Psest_4200at 4377.859 kb on - strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.879 kb on + strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.880 kb on - strand, within Psest_4200at 4377.883 kb on + strand, within Psest_4200at 4377.884 kb on - strand, within Psest_4200at 4378.710 kb on - strand, within Psest_4201at 4378.814 kb on + strand, within Psest_4201at 4378.814 kb on + strand, within Psest_4201at 4378.814 kb on + strand, within Psest_4201at 4378.815 kb on - strand, within Psest_4201at 4378.815 kb on - strand, within Psest_4201at 4379.261 kb on + strandat 4379.262 kb on - strandat 4379.573 kb on - strandat 4379.573 kb on - strandat 4379.612 kb on + strand, within Psest_4202at 4379.612 kb on + strand, within Psest_4202at 4379.613 kb on - strand, within Psest_4202at 4379.613 kb on - strand, within Psest_4202at 4379.613 kb on - strand, within Psest_4202at 4379.673 kb on - strand, within Psest_4202at 4379.735 kb on + strand, within Psest_4202at 4379.736 kb on - strand, within Psest_4202at 4380.122 kb on + strand, within Psest_4202at 4380.122 kb on + strand, within Psest_4202at 4380.122 kb on + strand, within Psest_4202at 4380.122 kb on + strand, within Psest_4202at 4380.122 kb on + strand, within Psest_4202at 4380.123 kb on - strand, within Psest_4202at 4380.123 kb on - strand, within Psest_4202at 4380.124 kb on + strand, within Psest_4202at 4380.124 kb on + strand, within Psest_4202at 4380.124 kb on + strand, within Psest_4202at 4380.124 kb on + strand, within Psest_4202at 4380.124 kb on + strand, within Psest_4202at 4380.124 kb on + strand, within Psest_4202at 4380.124 kb on + strand, within Psest_4202at 4380.125 kb on - strand, within Psest_4202at 4380.125 kb on - strand, within Psest_4202at 4380.125 kb on - strand, within Psest_4202at 4380.125 kb on - strand, within Psest_4202at 4380.125 kb on - strand, within Psest_4202at 4380.125 kb on - strand, within Psest_4202at 4380.125 kb on - strand, within Psest_4202

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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4,377,185 + Psest_4199 0.24 +0.1
4,377,185 + Psest_4199 0.24 -0.2
4,377,185 + Psest_4199 0.24 -0.3
4,377,185 + Psest_4199 0.24 +1.3
4,377,185 + Psest_4199 0.24 +1.4
4,377,186 - Psest_4199 0.24 +0.9
4,377,186 - Psest_4199 0.24 -0.6
4,377,186 - Psest_4199 0.24 +1.2
4,377,186 - Psest_4199 0.24 -0.3
4,377,186 - Psest_4199 0.24 -1.3
4,377,278 + Psest_4199 0.40 +0.7
4,377,278 + Psest_4199 0.40 +0.2
4,377,278 + Psest_4199 0.40 -1.3
4,377,279 - Psest_4199 0.40 +0.8
4,377,279 - Psest_4199 0.40 +2.7
4,377,279 - Psest_4199 0.40 +0.9
4,377,638 - +0.6
4,377,693 + Psest_4200 0.16 +0.8
4,377,693 + Psest_4200 0.16 -0.6
4,377,694 - Psest_4200 0.16 -1.6
4,377,729 + Psest_4200 0.24 +1.9
4,377,729 + Psest_4200 0.24 -0.5
4,377,730 - Psest_4200 0.24 -0.4
4,377,730 - Psest_4200 0.24 +0.2
4,377,858 + Psest_4200 0.53 +0.9
4,377,858 + Psest_4200 0.53 -1.2
4,377,859 - Psest_4200 0.54 +1.8
4,377,879 + Psest_4200 0.58 +0.6
4,377,879 + Psest_4200 0.58 -0.9
4,377,879 + Psest_4200 0.58 -2.4
4,377,879 + Psest_4200 0.58 +0.7
4,377,879 + Psest_4200 0.58 -1.3
4,377,879 + Psest_4200 0.58 -1.9
4,377,879 + Psest_4200 0.58 +0.9
4,377,879 + Psest_4200 0.58 -1.7
4,377,879 + Psest_4200 0.58 +0.1
4,377,879 + Psest_4200 0.58 -0.0
4,377,879 + Psest_4200 0.58 +0.6
4,377,879 + Psest_4200 0.58 -0.3
4,377,879 + Psest_4200 0.58 +0.4
4,377,879 + Psest_4200 0.58 -0.7
4,377,879 + Psest_4200 0.58 -0.1
4,377,879 + Psest_4200 0.58 -0.3
4,377,879 + Psest_4200 0.58 +0.5
4,377,879 + Psest_4200 0.58 -0.7
4,377,879 + Psest_4200 0.58 +0.3
4,377,880 - Psest_4200 0.58 -1.9
4,377,880 - Psest_4200 0.58 +0.6
4,377,880 - Psest_4200 0.58 -0.7
4,377,880 - Psest_4200 0.58 +1.7
4,377,880 - Psest_4200 0.58 -1.4
4,377,880 - Psest_4200 0.58 +1.2
4,377,880 - Psest_4200 0.58 -1.4
4,377,880 - Psest_4200 0.58 -1.5
4,377,880 - Psest_4200 0.58 +0.3
4,377,880 - Psest_4200 0.58 -0.7
4,377,880 - Psest_4200 0.58 +0.3
4,377,880 - Psest_4200 0.58 +0.1
4,377,880 - Psest_4200 0.58 +0.7
4,377,880 - Psest_4200 0.58 -0.4
4,377,880 - Psest_4200 0.58 +0.5
4,377,880 - Psest_4200 0.58 +1.5
4,377,880 - Psest_4200 0.58 -3.2
4,377,880 - Psest_4200 0.58 +0.0
4,377,883 + Psest_4200 0.59 +0.3
4,377,884 - Psest_4200 0.59 -0.1
4,378,710 - Psest_4201 0.53 +2.9
4,378,814 + Psest_4201 0.62 +2.8
4,378,814 + Psest_4201 0.62 +0.2
4,378,814 + Psest_4201 0.62 +1.1
4,378,815 - Psest_4201 0.62 -0.5
4,378,815 - Psest_4201 0.62 -0.2
4,379,261 + +0.6
4,379,262 - -2.2
4,379,573 - +0.1
4,379,573 - -1.8
4,379,612 + Psest_4202 0.12 -2.2
4,379,612 + Psest_4202 0.12 +2.2
4,379,613 - Psest_4202 0.12 +2.0
4,379,613 - Psest_4202 0.12 +0.1
4,379,613 - Psest_4202 0.12 -0.4
4,379,673 - Psest_4202 0.16 -1.7
4,379,735 + Psest_4202 0.20 +0.2
4,379,736 - Psest_4202 0.20 -2.5
4,380,122 + Psest_4202 0.45 +0.0
4,380,122 + Psest_4202 0.45 -0.9
4,380,122 + Psest_4202 0.45 +2.9
4,380,122 + Psest_4202 0.45 -0.9
4,380,122 + Psest_4202 0.45 +1.0
4,380,123 - Psest_4202 0.45 +1.8
4,380,123 - Psest_4202 0.45 +0.0
4,380,124 + Psest_4202 0.46 +1.8
4,380,124 + Psest_4202 0.46 +1.9
4,380,124 + Psest_4202 0.46 -1.7
4,380,124 + Psest_4202 0.46 -0.2
4,380,124 + Psest_4202 0.46 -1.4
4,380,124 + Psest_4202 0.46 -1.5
4,380,124 + Psest_4202 0.46 -0.7
4,380,125 - Psest_4202 0.46 -1.1
4,380,125 - Psest_4202 0.46 +0.7
4,380,125 - Psest_4202 0.46 +1.9
4,380,125 - Psest_4202 0.46 +1.5
4,380,125 - Psest_4202 0.46 -0.4
4,380,125 - Psest_4202 0.46 +0.8
4,380,125 - Psest_4202 0.46 -0.0

Or see this region's nucleotide sequence