Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3654

Experiment: Nickel (II) chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nickel (II) chloride 1 mM
3,813,778	+		Psest_3653	0.52	-1.1
3,813,778	+		Psest_3653	0.52	-0.9
3,813,779	-		Psest_3653	0.52	-0.8
3,813,861	+		Psest_3653	0.59	+0.3
3,813,861	+		Psest_3653	0.59	-1.0
3,813,862	-		Psest_3653	0.59	-0.5
3,813,862	-		Psest_3653	0.59	+1.5
3,813,877	-		Psest_3653	0.60	+0.0
3,813,925	-		Psest_3653	0.64	+0.1
3,813,975	+		Psest_3653	0.68	+1.2
3,813,975	+		Psest_3653	0.68	-0.2
3,813,975	+		Psest_3653	0.68	+0.1
3,813,976	-		Psest_3653	0.68	-2.1
3,814,131	+		Psest_3653	0.80	-0.3
3,814,132	-		Psest_3653	0.80	+0.0
3,814,132	-		Psest_3653	0.80	-1.3
3,814,141	-		Psest_3653	0.80	+0.2
3,814,390	+				-0.4
3,814,390	+				-1.6
3,814,390	+				-0.3
3,814,390	+				-2.1
3,814,390	+				-1.1
3,814,390	+				-1.0
3,814,390	+				-0.9
3,814,390	+				+0.4
3,814,391	-				-1.0
3,814,391	-				+1.3
3,814,391	-				-0.2
3,814,391	-				+0.7
3,814,459	+				-1.0
3,814,459	+				+0.7
3,814,459	+				+0.0
3,814,460	-				-0.6
3,814,460	-				-0.3
3,814,460	-				+2.2
3,814,498	+				-2.3
3,814,503	+				+0.8
3,814,504	-				+0.7
3,814,504	-				+1.5
3,814,519	-				-1.0
3,814,519	-				+0.3
3,814,519	-				+0.7
3,814,537	-				-0.5
3,814,571	+				-1.3
3,814,571	+				+0.4
3,814,572	-				-2.7
3,814,572	-				+1.0
3,814,572	-				+0.9
3,814,572	-				+0.9
3,814,572	-				-0.8
3,814,572	-				-0.1
3,814,572	-				+0.1
3,814,572	-				-0.6
3,814,586	+				-0.4
3,814,586	+				+0.1
3,814,586	+				-0.3
3,814,586	+				-1.5
3,814,586	+				+0.3
3,814,587	-				+0.2
3,814,587	-				+2.3
3,814,587	-				-0.5
3,814,587	-				-0.1
3,814,587	-				+1.4
3,814,587	-				-0.4
3,814,587	-				-0.4
3,814,601	+				-1.6
3,814,745	+		Psest_3654	0.13	-1.4
3,814,752	-		Psest_3654	0.14	+1.1
3,815,096	+		Psest_3654	0.37	-1.2
3,815,096	+		Psest_3654	0.37	-1.5
3,815,096	+		Psest_3654	0.37	-2.5
3,815,096	+		Psest_3654	0.37	+1.1
3,815,096	+		Psest_3654	0.37	-1.8
3,815,096	+		Psest_3654	0.37	+0.4
3,815,097	-		Psest_3654	0.37	-0.1
3,815,097	-		Psest_3654	0.37	+0.2
3,815,097	-		Psest_3654	0.37	+0.5
3,815,110	+		Psest_3654	0.38	-1.3
3,815,110	+		Psest_3654	0.38	+1.7
3,815,111	-		Psest_3654	0.38	-1.5
3,815,111	-		Psest_3654	0.38	-0.5
3,815,111	-		Psest_3654	0.38	-1.3
3,815,114	+		Psest_3654	0.39	+0.8
3,815,114	+		Psest_3654	0.39	+1.6
3,815,114	+		Psest_3654	0.39	+0.7
3,815,114	+		Psest_3654	0.39	+0.4
3,815,114	+		Psest_3654	0.39	+2.3
3,815,114	+		Psest_3654	0.39	+0.6
3,815,115	-		Psest_3654	0.39	+2.0
3,815,115	-		Psest_3654	0.39	+1.2
3,815,115	-		Psest_3654	0.39	+0.2
3,815,115	-		Psest_3654	0.39	+1.0
3,815,115	-		Psest_3654	0.39	+2.2
3,815,115	-		Psest_3654	0.39	+1.2
3,815,115	-		Psest_3654	0.39	+0.9
3,815,115	-		Psest_3654	0.39	+0.5
3,815,115	-		Psest_3654	0.39	+0.0
3,815,383	-		Psest_3654	0.57	+1.5
3,815,391	+		Psest_3654	0.57	-0.8
3,815,588	-		Psest_3654	0.71	+3.7
3,815,588	-		Psest_3654	0.71	+1.2
3,815,630	+		Psest_3654	0.74	-1.0
3,815,631	-		Psest_3654	0.74	-0.7
3,815,631	-		Psest_3654	0.74	+0.5
3,815,631	-		Psest_3654	0.74	-1.6
3,815,641	-		Psest_3654	0.74	-1.0
3,815,679	-		Psest_3654	0.77	-1.1
3,815,772	-		Psest_3654	0.83	+2.2
3,815,969	+				+1.3
3,815,969	+				-0.9
3,815,970	-				-0.7
3,816,021	+				-1.6
3,816,157	+		Psest_3655	0.16	-0.1
3,816,159	+		Psest_3655	0.16	-0.4
3,816,356	+		Psest_3655	0.40	-0.1
3,816,356	+		Psest_3655	0.40	+2.9
3,816,357	-		Psest_3655	0.40	+1.9
3,816,357	-		Psest_3655	0.40	+0.2
3,816,357	-		Psest_3655	0.40	-1.1
3,816,357	-		Psest_3655	0.40	+1.2
3,816,357	-		Psest_3655	0.40	-0.6
3,816,440	+		Psest_3655	0.50	-1.3
3,816,440	+		Psest_3655	0.50	-0.0
3,816,440	+		Psest_3655	0.50	-0.7
3,816,441	-		Psest_3655	0.50	-0.4
3,816,441	-		Psest_3655	0.50	-0.9
3,816,441	-		Psest_3655	0.50	+1.2
3,816,441	-		Psest_3655	0.50	+0.2
3,816,476	+		Psest_3655	0.54	+0.1
3,816,476	+		Psest_3655	0.54	-1.1
3,816,477	-		Psest_3655	0.54	+0.4
3,816,477	-		Psest_3655	0.54	+1.0
3,816,526	+		Psest_3655	0.60	+0.9
3,816,526	+		Psest_3655	0.60	+0.6
3,816,527	-		Psest_3655	0.60	-0.5
3,816,527	-		Psest_3655	0.60	+0.2
3,816,683	+		Psest_3655	0.79	-3.5
3,816,684	-		Psest_3655	0.79	+1.1
3,816,714	-		Psest_3655	0.83	-0.7
3,816,813	-				-1.6
3,816,815	+				-1.0
3,816,815	+				-0.6
3,816,816	-				-0.5
3,816,816	-				+1.6
3,816,842	+				+0.6
3,816,842	+				-1.8
3,816,842	+				-1.8
3,816,843	-				+0.3
3,816,843	-				-0.2
3,816,843	-				+0.4
3,816,843	-				-0.4
3,816,956	+				-0.4
3,816,956	+				+0.1
3,816,956	+				-1.1
3,816,956	+				+0.9
3,816,956	+				+0.5
3,816,957	-				-0.5
3,816,957	-				-0.6
3,816,957	-				-0.3
3,816,957	-				+1.0
3,816,957	-				+0.5
3,816,957	-				-1.1
3,816,957	-				-0.4
3,816,957	-				+1.0
3,816,957	-				+0.4
3,816,957	-				+0.9
3,816,965	+				+0.3
3,816,965	+				+0.7
3,816,965	+				+0.3
3,816,965	+				-0.2
3,816,965	+				-0.0
3,816,965	+				-0.1
3,816,965	+				-2.1
3,816,966	-				+0.5
3,816,966	-				+2.8
3,816,966	-				+0.6
3,816,966	-				+0.7