Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2157 and Psest_2158 overlap by 8 nucleotides Psest_2158 and Psest_2159 are separated by 281 nucleotides
Psest_2157: Psest_2157 - trehalose synthase, at 2,305,565 to 2,308,891
_2157
Psest_2158: Psest_2158 - alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase, at 2,308,884 to 2,311,097
_2158
Psest_2159: Psest_2159 - Predicted integral membrane protein, at 2,311,379 to 2,312,377
_2159
Position (kb)
2308
2309
2310
2311
2312 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2307.922 kb on + strand, within Psest_2157 at 2308.387 kb on + strand, within Psest_2157 at 2308.467 kb on - strand, within Psest_2157 at 2308.655 kb on + strand at 2308.785 kb on - strand at 2308.869 kb on + strand at 2308.869 kb on + strand at 2308.945 kb on + strand at 2309.148 kb on + strand, within Psest_2158 at 2309.148 kb on + strand, within Psest_2158 at 2309.467 kb on - strand, within Psest_2158 at 2309.467 kb on - strand, within Psest_2158 at 2309.472 kb on + strand, within Psest_2158 at 2309.473 kb on - strand, within Psest_2158 at 2309.473 kb on - strand, within Psest_2158 at 2309.473 kb on - strand, within Psest_2158 at 2309.652 kb on + strand, within Psest_2158 at 2309.652 kb on + strand, within Psest_2158 at 2309.652 kb on + strand, within Psest_2158 at 2309.652 kb on + strand, within Psest_2158 at 2309.652 kb on + strand, within Psest_2158 at 2309.653 kb on - strand, within Psest_2158 at 2309.653 kb on - strand, within Psest_2158 at 2309.653 kb on - strand, within Psest_2158 at 2309.653 kb on - strand, within Psest_2158 at 2309.653 kb on - strand, within Psest_2158 at 2309.653 kb on - strand, within Psest_2158 at 2309.653 kb on - strand, within Psest_2158 at 2309.653 kb on - strand, within Psest_2158 at 2309.653 kb on - strand, within Psest_2158 at 2309.653 kb on - strand, within Psest_2158 at 2309.653 kb on - strand, within Psest_2158 at 2309.706 kb on + strand, within Psest_2158 at 2309.743 kb on - strand, within Psest_2158 at 2309.988 kb on + strand, within Psest_2158 at 2309.988 kb on + strand, within Psest_2158 at 2309.989 kb on - strand, within Psest_2158 at 2309.989 kb on - strand, within Psest_2158 at 2309.995 kb on - strand, within Psest_2158 at 2309.995 kb on - strand, within Psest_2158 at 2310.033 kb on - strand, within Psest_2158 at 2310.036 kb on + strand, within Psest_2158 at 2310.036 kb on + strand, within Psest_2158 at 2310.036 kb on + strand, within Psest_2158 at 2310.036 kb on + strand, within Psest_2158 at 2310.036 kb on + strand, within Psest_2158 at 2310.036 kb on + strand, within Psest_2158 at 2310.036 kb on + strand, within Psest_2158 at 2310.036 kb on + strand, within Psest_2158 at 2310.037 kb on - strand, within Psest_2158 at 2310.037 kb on - strand, within Psest_2158 at 2310.037 kb on - strand, within Psest_2158 at 2310.037 kb on - strand, within Psest_2158 at 2310.037 kb on - strand, within Psest_2158 at 2310.037 kb on - strand, within Psest_2158 at 2310.037 kb on - strand, within Psest_2158 at 2310.037 kb on - strand, within Psest_2158 at 2310.037 kb on - strand, within Psest_2158 at 2310.037 kb on - strand, within Psest_2158 at 2310.037 kb on - strand, within Psest_2158 at 2310.037 kb on - strand, within Psest_2158 at 2310.037 kb on - strand, within Psest_2158 at 2310.037 kb on - strand, within Psest_2158 at 2310.037 kb on - strand, within Psest_2158 at 2310.037 kb on - strand, within Psest_2158 at 2310.037 kb on - strand, within Psest_2158 at 2310.037 kb on - strand, within Psest_2158 at 2310.037 kb on - strand, within Psest_2158 at 2310.037 kb on - strand, within Psest_2158 at 2310.037 kb on - strand, within Psest_2158 at 2310.042 kb on + strand, within Psest_2158 at 2310.042 kb on + strand, within Psest_2158 at 2310.042 kb on + strand, within Psest_2158 at 2310.042 kb on + strand, within Psest_2158 at 2310.042 kb on + strand, within Psest_2158 at 2310.042 kb on + strand, within Psest_2158 at 2310.042 kb on + strand, within Psest_2158 at 2310.042 kb on + strand, within Psest_2158 at 2310.042 kb on + strand, within Psest_2158 at 2310.043 kb on - strand, within Psest_2158 at 2310.043 kb on - strand, within Psest_2158 at 2310.043 kb on - strand, within Psest_2158 at 2310.043 kb on - strand, within Psest_2158 at 2310.043 kb on - strand, within Psest_2158 at 2310.043 kb on - strand, within Psest_2158 at 2310.043 kb on - strand, within Psest_2158 at 2310.043 kb on - strand, within Psest_2158 at 2310.043 kb on - strand, within Psest_2158 at 2310.043 kb on - strand, within Psest_2158 at 2310.043 kb on - strand, within Psest_2158 at 2310.163 kb on - strand, within Psest_2158 at 2310.354 kb on + strand, within Psest_2158 at 2310.394 kb on - strand, within Psest_2158 at 2310.394 kb on - strand, within Psest_2158 at 2310.394 kb on - strand, within Psest_2158 at 2310.394 kb on - strand, within Psest_2158 at 2310.423 kb on + strand, within Psest_2158 at 2310.423 kb on + strand, within Psest_2158 at 2310.423 kb on + strand, within Psest_2158 at 2310.423 kb on + strand, within Psest_2158 at 2310.424 kb on - strand, within Psest_2158 at 2310.424 kb on - strand, within Psest_2158 at 2310.456 kb on + strand, within Psest_2158 at 2310.456 kb on + strand, within Psest_2158 at 2310.456 kb on + strand, within Psest_2158 at 2310.456 kb on + strand, within Psest_2158 at 2310.456 kb on + strand, within Psest_2158 at 2310.456 kb on + strand, within Psest_2158 at 2310.456 kb on + strand, within Psest_2158 at 2310.456 kb on + strand, within Psest_2158 at 2310.456 kb on + strand, within Psest_2158 at 2310.456 kb on + strand, within Psest_2158 at 2310.456 kb on + strand, within Psest_2158 at 2310.457 kb on - strand, within Psest_2158 at 2310.457 kb on - strand, within Psest_2158 at 2310.457 kb on - strand, within Psest_2158 at 2310.457 kb on - strand, within Psest_2158 at 2310.457 kb on - strand, within Psest_2158 at 2310.457 kb on - strand, within Psest_2158 at 2310.457 kb on - strand, within Psest_2158 at 2310.457 kb on - strand, within Psest_2158 at 2310.457 kb on - strand, within Psest_2158 at 2310.576 kb on + strand, within Psest_2158 at 2310.576 kb on + strand, within Psest_2158 at 2310.742 kb on - strand, within Psest_2158 at 2310.821 kb on + strand, within Psest_2158 at 2310.821 kb on + strand, within Psest_2158 at 2310.822 kb on - strand, within Psest_2158 at 2311.096 kb on - strand at 2311.152 kb on + strand at 2311.283 kb on - strand at 2311.283 kb on - strand at 2311.455 kb on + strand at 2311.491 kb on + strand, within Psest_2159 at 2311.492 kb on - strand, within Psest_2159 at 2311.492 kb on - strand, within Psest_2159 at 2311.492 kb on - strand, within Psest_2159 at 2311.492 kb on - strand, within Psest_2159 at 2311.492 kb on - strand, within Psest_2159 at 2311.677 kb on + strand, within Psest_2159 at 2311.677 kb on + strand, within Psest_2159 at 2311.677 kb on + strand, within Psest_2159 at 2311.677 kb on + strand, within Psest_2159 at 2311.677 kb on + strand, within Psest_2159 at 2311.677 kb on + strand, within Psest_2159 at 2311.677 kb on + strand, within Psest_2159 at 2311.677 kb on + strand, within Psest_2159 at 2311.677 kb on + strand, within Psest_2159 at 2311.677 kb on + strand, within Psest_2159 at 2311.677 kb on + strand, within Psest_2159 at 2311.678 kb on - strand, within Psest_2159 at 2311.678 kb on - strand, within Psest_2159 at 2311.678 kb on - strand, within Psest_2159 at 2311.678 kb on - strand, within Psest_2159 at 2311.678 kb on - strand, within Psest_2159 at 2311.678 kb on - strand, within Psest_2159 at 2311.678 kb on - strand, within Psest_2159 at 2311.678 kb on - strand, within Psest_2159 at 2311.678 kb on - strand, within Psest_2159 at 2311.678 kb on - strand, within Psest_2159 at 2311.678 kb on - strand, within Psest_2159 at 2311.678 kb on - strand, within Psest_2159 at 2311.678 kb on - strand, within Psest_2159 at 2311.678 kb on - strand, within Psest_2159 at 2311.678 kb on - strand, within Psest_2159 at 2311.680 kb on + strand, within Psest_2159 at 2311.680 kb on + strand, within Psest_2159 at 2311.680 kb on + strand, within Psest_2159 at 2311.681 kb on - strand, within Psest_2159 at 2311.681 kb on - strand, within Psest_2159 at 2311.818 kb on + strand, within Psest_2159 at 2311.819 kb on - strand, within Psest_2159 at 2311.867 kb on + strand, within Psest_2159 at 2311.867 kb on + strand, within Psest_2159 at 2311.938 kb on + strand, within Psest_2159 at 2311.939 kb on - strand, within Psest_2159 at 2312.073 kb on + strand, within Psest_2159 at 2312.074 kb on - strand, within Psest_2159 at 2312.074 kb on - strand, within Psest_2159
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 2,307,922 + Psest_2157 0.71 -0.4 2,308,387 + Psest_2157 0.85 -0.5 2,308,467 - Psest_2157 0.87 -0.1 2,308,655 + +0.9 2,308,785 - +1.6 2,308,869 + -0.5 2,308,869 + -0.3 2,308,945 + -1.1 2,309,148 + Psest_2158 0.12 -0.2 2,309,148 + Psest_2158 0.12 -1.3 2,309,467 - Psest_2158 0.26 -1.4 2,309,467 - Psest_2158 0.26 -1.2 2,309,472 + Psest_2158 0.27 +1.0 2,309,473 - Psest_2158 0.27 -2.2 2,309,473 - Psest_2158 0.27 +0.2 2,309,473 - Psest_2158 0.27 -1.1 2,309,652 + Psest_2158 0.35 -3.1 2,309,652 + Psest_2158 0.35 -2.5 2,309,652 + Psest_2158 0.35 -1.9 2,309,652 + Psest_2158 0.35 +0.5 2,309,652 + Psest_2158 0.35 -2.2 2,309,653 - Psest_2158 0.35 +0.4 2,309,653 - Psest_2158 0.35 -1.5 2,309,653 - Psest_2158 0.35 -1.9 2,309,653 - Psest_2158 0.35 +0.1 2,309,653 - Psest_2158 0.35 +1.6 2,309,653 - Psest_2158 0.35 +0.3 2,309,653 - Psest_2158 0.35 -0.1 2,309,653 - Psest_2158 0.35 +0.6 2,309,653 - Psest_2158 0.35 -0.2 2,309,653 - Psest_2158 0.35 -0.5 2,309,653 - Psest_2158 0.35 -1.9 2,309,706 + Psest_2158 0.37 -1.5 2,309,743 - Psest_2158 0.39 -0.5 2,309,988 + Psest_2158 0.50 -0.7 2,309,988 + Psest_2158 0.50 -0.1 2,309,989 - Psest_2158 0.50 -0.3 2,309,989 - Psest_2158 0.50 -0.6 2,309,995 - Psest_2158 0.50 +0.9 2,309,995 - Psest_2158 0.50 -1.4 2,310,033 - Psest_2158 0.52 -1.1 2,310,036 + Psest_2158 0.52 -0.7 2,310,036 + Psest_2158 0.52 -1.2 2,310,036 + Psest_2158 0.52 -0.8 2,310,036 + Psest_2158 0.52 -0.8 2,310,036 + Psest_2158 0.52 +0.9 2,310,036 + Psest_2158 0.52 +0.7 2,310,036 + Psest_2158 0.52 -1.3 2,310,036 + Psest_2158 0.52 +0.1 2,310,037 - Psest_2158 0.52 -1.2 2,310,037 - Psest_2158 0.52 -1.5 2,310,037 - Psest_2158 0.52 -1.1 2,310,037 - Psest_2158 0.52 -1.1 2,310,037 - Psest_2158 0.52 -0.7 2,310,037 - Psest_2158 0.52 -1.7 2,310,037 - Psest_2158 0.52 +2.8 2,310,037 - Psest_2158 0.52 -0.4 2,310,037 - Psest_2158 0.52 -0.7 2,310,037 - Psest_2158 0.52 +0.0 2,310,037 - Psest_2158 0.52 +0.2 2,310,037 - Psest_2158 0.52 -0.7 2,310,037 - Psest_2158 0.52 -2.0 2,310,037 - Psest_2158 0.52 -1.6 2,310,037 - Psest_2158 0.52 -2.0 2,310,037 - Psest_2158 0.52 -1.1 2,310,037 - Psest_2158 0.52 -1.5 2,310,037 - Psest_2158 0.52 -1.5 2,310,037 - Psest_2158 0.52 -0.6 2,310,037 - Psest_2158 0.52 -0.3 2,310,037 - Psest_2158 0.52 -2.2 2,310,042 + Psest_2158 0.52 -0.9 2,310,042 + Psest_2158 0.52 +0.3 2,310,042 + Psest_2158 0.52 -1.9 2,310,042 + Psest_2158 0.52 -0.1 2,310,042 + Psest_2158 0.52 -3.2 2,310,042 + Psest_2158 0.52 -1.5 2,310,042 + Psest_2158 0.52 -1.4 2,310,042 + Psest_2158 0.52 +0.1 2,310,042 + Psest_2158 0.52 -0.2 2,310,043 - Psest_2158 0.52 -1.2 2,310,043 - Psest_2158 0.52 -0.2 2,310,043 - Psest_2158 0.52 +0.1 2,310,043 - Psest_2158 0.52 -1.7 2,310,043 - Psest_2158 0.52 -1.8 2,310,043 - Psest_2158 0.52 -0.2 2,310,043 - Psest_2158 0.52 +0.6 2,310,043 - Psest_2158 0.52 +0.1 2,310,043 - Psest_2158 0.52 -1.4 2,310,043 - Psest_2158 0.52 -0.6 2,310,043 - Psest_2158 0.52 +1.3 2,310,163 - Psest_2158 0.58 -0.2 2,310,354 + Psest_2158 0.66 -0.3 2,310,394 - Psest_2158 0.68 -1.3 2,310,394 - Psest_2158 0.68 +0.6 2,310,394 - Psest_2158 0.68 +0.4 2,310,394 - Psest_2158 0.68 -0.7 2,310,423 + Psest_2158 0.70 +1.7 2,310,423 + Psest_2158 0.70 -2.2 2,310,423 + Psest_2158 0.70 -1.6 2,310,423 + Psest_2158 0.70 -1.5 2,310,424 - Psest_2158 0.70 +1.2 2,310,424 - Psest_2158 0.70 +0.2 2,310,456 + Psest_2158 0.71 -0.5 2,310,456 + Psest_2158 0.71 -1.2 2,310,456 + Psest_2158 0.71 +0.1 2,310,456 + Psest_2158 0.71 -1.1 2,310,456 + Psest_2158 0.71 -2.1 2,310,456 + Psest_2158 0.71 -0.0 2,310,456 + Psest_2158 0.71 -0.1 2,310,456 + Psest_2158 0.71 -1.5 2,310,456 + Psest_2158 0.71 -1.0 2,310,456 + Psest_2158 0.71 -2.4 2,310,456 + Psest_2158 0.71 +0.1 2,310,457 - Psest_2158 0.71 -0.8 2,310,457 - Psest_2158 0.71 -1.8 2,310,457 - Psest_2158 0.71 -0.7 2,310,457 - Psest_2158 0.71 -1.1 2,310,457 - Psest_2158 0.71 -0.2 2,310,457 - Psest_2158 0.71 +0.8 2,310,457 - Psest_2158 0.71 -1.9 2,310,457 - Psest_2158 0.71 -0.7 2,310,457 - Psest_2158 0.71 -2.0 2,310,576 + Psest_2158 0.76 -1.3 2,310,576 + Psest_2158 0.76 +0.4 2,310,742 - Psest_2158 0.84 -0.5 2,310,821 + Psest_2158 0.87 -0.2 2,310,821 + Psest_2158 0.87 -2.3 2,310,822 - Psest_2158 0.88 +0.6 2,311,096 - +0.4 2,311,152 + -0.3 2,311,283 - +0.2 2,311,283 - -0.6 2,311,455 + -2.0 2,311,491 + Psest_2159 0.11 -0.3 2,311,492 - Psest_2159 0.11 +0.7 2,311,492 - Psest_2159 0.11 -0.8 2,311,492 - Psest_2159 0.11 +0.6 2,311,492 - Psest_2159 0.11 -0.2 2,311,492 - Psest_2159 0.11 +0.3 2,311,677 + Psest_2159 0.30 +1.9 2,311,677 + Psest_2159 0.30 +0.4 2,311,677 + Psest_2159 0.30 +1.5 2,311,677 + Psest_2159 0.30 +0.3 2,311,677 + Psest_2159 0.30 -0.9 2,311,677 + Psest_2159 0.30 +0.2 2,311,677 + Psest_2159 0.30 -0.5 2,311,677 + Psest_2159 0.30 -0.1 2,311,677 + Psest_2159 0.30 -0.3 2,311,677 + Psest_2159 0.30 -0.5 2,311,677 + Psest_2159 0.30 -0.8 2,311,678 - Psest_2159 0.30 +0.2 2,311,678 - Psest_2159 0.30 -0.5 2,311,678 - Psest_2159 0.30 +0.6 2,311,678 - Psest_2159 0.30 -0.2 2,311,678 - Psest_2159 0.30 -0.1 2,311,678 - Psest_2159 0.30 +1.1 2,311,678 - Psest_2159 0.30 -3.1 2,311,678 - Psest_2159 0.30 -0.2 2,311,678 - Psest_2159 0.30 +1.6 2,311,678 - Psest_2159 0.30 +0.1 2,311,678 - Psest_2159 0.30 +2.2 2,311,678 - Psest_2159 0.30 -1.2 2,311,678 - Psest_2159 0.30 +0.5 2,311,678 - Psest_2159 0.30 -1.5 2,311,678 - Psest_2159 0.30 +0.5 2,311,680 + Psest_2159 0.30 +1.5 2,311,680 + Psest_2159 0.30 +0.3 2,311,680 + Psest_2159 0.30 +0.8 2,311,681 - Psest_2159 0.30 +0.2 2,311,681 - Psest_2159 0.30 +1.5 2,311,818 + Psest_2159 0.44 -0.4 2,311,819 - Psest_2159 0.44 +0.8 2,311,867 + Psest_2159 0.49 -1.0 2,311,867 + Psest_2159 0.49 -0.3 2,311,938 + Psest_2159 0.56 -0.2 2,311,939 - Psest_2159 0.56 -0.5 2,312,073 + Psest_2159 0.69 -1.8 2,312,074 - Psest_2159 0.70 +0.1 2,312,074 - Psest_2159 0.70 +0.1
Or see this region's nucleotide sequence