Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0172 and Psest_0173 overlap by 4 nucleotides Psest_0173 and Psest_0174 are separated by 129 nucleotides Psest_0174 and Psest_0175 are separated by 16 nucleotides Psest_0175 and Psest_0176 are separated by 1 nucleotides
Psest_0172: Psest_0172 - Uncharacterized protein conserved in bacteria, at 166,834 to 167,148
_0172
Psest_0173: Psest_0173 - TIGR02449 family protein, at 167,145 to 167,354
_0173
Psest_0174: Psest_0174 - Uncharacterized protein conserved in bacteria, at 167,484 to 168,038
_0174
Psest_0175: Psest_0175 - Xaa-Pro aminopeptidase, at 168,055 to 169,389
_0175
Psest_0176: Psest_0176 - 2-polyprenyl-6-methoxyphenol 4-hydroxylase, at 169,391 to 170,569
_0176
Position (kb) 168
169
170 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 167.102 kb on + strand, within Psest_0172 at 167.102 kb on + strand, within Psest_0172 at 167.102 kb on + strand, within Psest_0172 at 167.103 kb on - strand at 167.103 kb on - strand, within Psest_0172 at 167.103 kb on - strand, within Psest_0172 at 167.433 kb on - strand at 167.433 kb on - strand at 167.454 kb on - strand at 167.454 kb on - strand at 167.454 kb on - strand at 167.454 kb on - strand at 167.940 kb on + strand, within Psest_0174 at 167.940 kb on + strand, within Psest_0174 at 167.941 kb on - strand, within Psest_0174 at 167.941 kb on - strand, within Psest_0174 at 167.941 kb on - strand, within Psest_0174 at 167.958 kb on + strand, within Psest_0174 at 167.958 kb on + strand, within Psest_0174 at 167.959 kb on - strand, within Psest_0174 at 167.959 kb on - strand, within Psest_0174 at 167.959 kb on - strand, within Psest_0174 at 167.959 kb on - strand, within Psest_0174 at 168.154 kb on + strand at 168.154 kb on + strand at 168.154 kb on + strand at 168.154 kb on + strand at 168.154 kb on + strand at 168.154 kb on + strand at 168.154 kb on + strand at 168.274 kb on + strand, within Psest_0175 at 168.348 kb on + strand, within Psest_0175 at 168.436 kb on + strand, within Psest_0175 at 168.437 kb on - strand, within Psest_0175 at 168.440 kb on - strand, within Psest_0175 at 168.784 kb on + strand, within Psest_0175 at 168.856 kb on + strand, within Psest_0175 at 168.877 kb on - strand, within Psest_0175 at 168.933 kb on - strand, within Psest_0175 at 168.963 kb on + strand, within Psest_0175 at 169.084 kb on + strand, within Psest_0175 at 169.096 kb on + strand, within Psest_0175 at 169.096 kb on + strand, within Psest_0175 at 169.096 kb on + strand, within Psest_0175 at 169.096 kb on + strand, within Psest_0175 at 169.096 kb on + strand, within Psest_0175 at 169.096 kb on + strand, within Psest_0175 at 169.216 kb on + strand, within Psest_0175 at 169.216 kb on + strand, within Psest_0175 at 169.216 kb on + strand, within Psest_0175 at 169.216 kb on + strand, within Psest_0175 at 169.216 kb on + strand, within Psest_0175 at 169.216 kb on + strand, within Psest_0175 at 169.216 kb on + strand, within Psest_0175 at 169.216 kb on + strand, within Psest_0175 at 169.216 kb on + strand, within Psest_0175 at 169.217 kb on - strand, within Psest_0175 at 169.217 kb on - strand, within Psest_0175 at 169.217 kb on - strand, within Psest_0175 at 169.217 kb on - strand, within Psest_0175 at 169.217 kb on - strand, within Psest_0175 at 169.217 kb on - strand, within Psest_0175 at 169.217 kb on - strand, within Psest_0175 at 169.217 kb on - strand, within Psest_0175 at 169.217 kb on - strand, within Psest_0175 at 169.217 kb on - strand, within Psest_0175 at 169.217 kb on - strand, within Psest_0175 at 169.217 kb on - strand, within Psest_0175 at 169.217 kb on - strand, within Psest_0175 at 169.217 kb on - strand, within Psest_0175 at 169.217 kb on - strand, within Psest_0175 at 169.217 kb on - strand, within Psest_0175 at 169.217 kb on - strand, within Psest_0175 at 169.218 kb on + strand, within Psest_0175
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 167,102 + Psest_0172 0.85 -0.3 167,102 + Psest_0172 0.85 +0.6 167,102 + Psest_0172 0.85 -1.4 167,103 - -0.2 167,103 - Psest_0172 0.85 +0.1 167,103 - Psest_0172 0.85 -2.5 167,433 - -3.1 167,433 - -0.9 167,454 - -1.7 167,454 - -3.2 167,454 - -0.7 167,454 - -0.4 167,940 + Psest_0174 0.82 +0.2 167,940 + Psest_0174 0.82 +0.6 167,941 - Psest_0174 0.82 -1.1 167,941 - Psest_0174 0.82 -1.4 167,941 - Psest_0174 0.82 -0.3 167,958 + Psest_0174 0.85 +0.2 167,958 + Psest_0174 0.85 +1.8 167,959 - Psest_0174 0.86 -0.6 167,959 - Psest_0174 0.86 -0.7 167,959 - Psest_0174 0.86 -1.0 167,959 - Psest_0174 0.86 -1.4 168,154 + +0.8 168,154 + -0.6 168,154 + -1.3 168,154 + +0.0 168,154 + -0.4 168,154 + -1.3 168,154 + -1.7 168,274 + Psest_0175 0.16 -2.6 168,348 + Psest_0175 0.22 -1.1 168,436 + Psest_0175 0.29 -1.7 168,437 - Psest_0175 0.29 -0.6 168,440 - Psest_0175 0.29 +0.4 168,784 + Psest_0175 0.55 -0.8 168,856 + Psest_0175 0.60 -2.0 168,877 - Psest_0175 0.62 +0.4 168,933 - Psest_0175 0.66 -2.3 168,963 + Psest_0175 0.68 -1.3 169,084 + Psest_0175 0.77 -0.9 169,096 + Psest_0175 0.78 -0.4 169,096 + Psest_0175 0.78 -1.9 169,096 + Psest_0175 0.78 -0.8 169,096 + Psest_0175 0.78 -0.0 169,096 + Psest_0175 0.78 -0.9 169,096 + Psest_0175 0.78 -2.9 169,216 + Psest_0175 0.87 -2.5 169,216 + Psest_0175 0.87 +0.3 169,216 + Psest_0175 0.87 -1.6 169,216 + Psest_0175 0.87 +1.2 169,216 + Psest_0175 0.87 +0.6 169,216 + Psest_0175 0.87 +1.7 169,216 + Psest_0175 0.87 -1.9 169,216 + Psest_0175 0.87 +0.4 169,216 + Psest_0175 0.87 -2.3 169,217 - Psest_0175 0.87 -1.4 169,217 - Psest_0175 0.87 -1.2 169,217 - Psest_0175 0.87 -0.4 169,217 - Psest_0175 0.87 +3.6 169,217 - Psest_0175 0.87 -1.1 169,217 - Psest_0175 0.87 -0.4 169,217 - Psest_0175 0.87 -2.1 169,217 - Psest_0175 0.87 +0.8 169,217 - Psest_0175 0.87 -0.4 169,217 - Psest_0175 0.87 +0.8 169,217 - Psest_0175 0.87 -0.2 169,217 - Psest_0175 0.87 -0.4 169,217 - Psest_0175 0.87 +0.4 169,217 - Psest_0175 0.87 -0.9 169,217 - Psest_0175 0.87 +1.4 169,217 - Psest_0175 0.87 -1.4 169,217 - Psest_0175 0.87 -0.9 169,218 + Psest_0175 0.87 -0.8
Or see this region's nucleotide sequence