Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0174

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0170 and Psest_0172 are separated by 218 nucleotidesPsest_0172 and Psest_0173 overlap by 4 nucleotidesPsest_0173 and Psest_0174 are separated by 129 nucleotidesPsest_0174 and Psest_0175 are separated by 16 nucleotides Psest_0170: Psest_0170 - 5,10-methenyltetrahydrofolate synthetase, at 166,013 to 166,615 _0170 Psest_0172: Psest_0172 - Uncharacterized protein conserved in bacteria, at 166,834 to 167,148 _0172 Psest_0173: Psest_0173 - TIGR02449 family protein, at 167,145 to 167,354 _0173 Psest_0174: Psest_0174 - Uncharacterized protein conserved in bacteria, at 167,484 to 168,038 _0174 Psest_0175: Psest_0175 - Xaa-Pro aminopeptidase, at 168,055 to 169,389 _0175 Position (kb) 167 168 169Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 166.649 kb on + strandat 166.650 kb on - strandat 166.683 kb on + strandat 166.695 kb on + strandat 166.696 kb on - strandat 166.696 kb on - strandat 166.731 kb on + strandat 166.731 kb on + strandat 166.731 kb on + strandat 166.731 kb on + strandat 166.731 kb on + strandat 166.732 kb on - strandat 166.732 kb on - strandat 166.732 kb on - strandat 166.732 kb on - strandat 166.737 kb on + strandat 166.737 kb on + strandat 166.749 kb on + strandat 166.750 kb on - strandat 166.809 kb on + strandat 166.809 kb on + strandat 166.809 kb on + strandat 166.809 kb on + strandat 166.810 kb on - strandat 166.810 kb on - strandat 166.810 kb on - strandat 166.810 kb on - strandat 166.810 kb on - strandat 166.897 kb on + strand, within Psest_0172at 166.897 kb on + strand, within Psest_0172at 166.897 kb on + strand, within Psest_0172at 166.897 kb on + strand, within Psest_0172at 166.897 kb on + strand, within Psest_0172at 166.897 kb on + strand, within Psest_0172at 166.897 kb on + strand, within Psest_0172at 166.897 kb on + strand, within Psest_0172at 166.897 kb on + strand, within Psest_0172at 166.898 kb on - strand, within Psest_0172at 166.898 kb on - strand, within Psest_0172at 166.898 kb on - strand, within Psest_0172at 166.898 kb on - strand, within Psest_0172at 166.898 kb on - strand, within Psest_0172at 166.898 kb on - strand, within Psest_0172at 166.898 kb on - strand, within Psest_0172at 166.898 kb on - strand, within Psest_0172at 166.898 kb on - strand, within Psest_0172at 166.898 kb on - strand, within Psest_0172at 166.898 kb on - strand, within Psest_0172at 167.102 kb on + strand, within Psest_0172at 167.102 kb on + strand, within Psest_0172at 167.102 kb on + strand, within Psest_0172at 167.103 kb on - strandat 167.103 kb on - strand, within Psest_0172at 167.103 kb on - strand, within Psest_0172at 167.433 kb on - strandat 167.433 kb on - strandat 167.454 kb on - strandat 167.454 kb on - strandat 167.454 kb on - strandat 167.454 kb on - strandat 167.940 kb on + strand, within Psest_0174at 167.940 kb on + strand, within Psest_0174at 167.941 kb on - strand, within Psest_0174at 167.941 kb on - strand, within Psest_0174at 167.941 kb on - strand, within Psest_0174at 167.958 kb on + strand, within Psest_0174at 167.958 kb on + strand, within Psest_0174at 167.959 kb on - strand, within Psest_0174at 167.959 kb on - strand, within Psest_0174at 167.959 kb on - strand, within Psest_0174at 167.959 kb on - strand, within Psest_0174at 168.154 kb on + strandat 168.154 kb on + strandat 168.154 kb on + strandat 168.154 kb on + strandat 168.154 kb on + strandat 168.154 kb on + strandat 168.154 kb on + strandat 168.274 kb on + strand, within Psest_0175at 168.348 kb on + strand, within Psest_0175at 168.436 kb on + strand, within Psest_0175at 168.437 kb on - strand, within Psest_0175at 168.440 kb on - strand, within Psest_0175at 168.784 kb on + strand, within Psest_0175at 168.856 kb on + strand, within Psest_0175at 168.877 kb on - strand, within Psest_0175at 168.933 kb on - strand, within Psest_0175at 168.963 kb on + strand, within Psest_0175

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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166,649 + -0.5
166,650 - -2.6
166,683 + -0.0
166,695 + -0.8
166,696 - -2.9
166,696 - -0.7
166,731 + -0.8
166,731 + +1.1
166,731 + -1.8
166,731 + -0.4
166,731 + +0.7
166,732 - -1.2
166,732 - -0.3
166,732 - -0.2
166,732 - +0.1
166,737 + -1.3
166,737 + -1.6
166,749 + -1.4
166,750 - -1.7
166,809 + -3.0
166,809 + -0.4
166,809 + -0.9
166,809 + -1.7
166,810 - -2.3
166,810 - -1.5
166,810 - -0.6
166,810 - -0.1
166,810 - -0.0
166,897 + Psest_0172 0.20 -0.9
166,897 + Psest_0172 0.20 +1.3
166,897 + Psest_0172 0.20 -2.4
166,897 + Psest_0172 0.20 +0.8
166,897 + Psest_0172 0.20 -1.7
166,897 + Psest_0172 0.20 +0.6
166,897 + Psest_0172 0.20 -1.3
166,897 + Psest_0172 0.20 -2.7
166,897 + Psest_0172 0.20 -0.1
166,898 - Psest_0172 0.20 -0.6
166,898 - Psest_0172 0.20 -1.3
166,898 - Psest_0172 0.20 +0.4
166,898 - Psest_0172 0.20 -0.3
166,898 - Psest_0172 0.20 +1.7
166,898 - Psest_0172 0.20 -0.3
166,898 - Psest_0172 0.20 +2.2
166,898 - Psest_0172 0.20 -1.6
166,898 - Psest_0172 0.20 -0.0
166,898 - Psest_0172 0.20 +0.8
166,898 - Psest_0172 0.20 -0.2
167,102 + Psest_0172 0.85 -0.3
167,102 + Psest_0172 0.85 +0.6
167,102 + Psest_0172 0.85 -1.4
167,103 - -0.2
167,103 - Psest_0172 0.85 +0.1
167,103 - Psest_0172 0.85 -2.5
167,433 - -3.1
167,433 - -0.9
167,454 - -1.7
167,454 - -3.2
167,454 - -0.7
167,454 - -0.4
167,940 + Psest_0174 0.82 +0.2
167,940 + Psest_0174 0.82 +0.6
167,941 - Psest_0174 0.82 -1.1
167,941 - Psest_0174 0.82 -1.4
167,941 - Psest_0174 0.82 -0.3
167,958 + Psest_0174 0.85 +0.2
167,958 + Psest_0174 0.85 +1.8
167,959 - Psest_0174 0.86 -0.6
167,959 - Psest_0174 0.86 -0.7
167,959 - Psest_0174 0.86 -1.0
167,959 - Psest_0174 0.86 -1.4
168,154 + +0.8
168,154 + -0.6
168,154 + -1.3
168,154 + +0.0
168,154 + -0.4
168,154 + -1.3
168,154 + -1.7
168,274 + Psest_0175 0.16 -2.6
168,348 + Psest_0175 0.22 -1.1
168,436 + Psest_0175 0.29 -1.7
168,437 - Psest_0175 0.29 -0.6
168,440 - Psest_0175 0.29 +0.4
168,784 + Psest_0175 0.55 -0.8
168,856 + Psest_0175 0.60 -2.0
168,877 - Psest_0175 0.62 +0.4
168,933 - Psest_0175 0.66 -2.3
168,963 + Psest_0175 0.68 -1.3

Or see this region's nucleotide sequence