Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0133

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0132 and Psest_0133 are separated by 26 nucleotidesPsest_0133 and Psest_0134 are separated by 16 nucleotides Psest_0132: Psest_0132 - type VI secretion protein, EvpB/VC_A0108 family, at 130,780 to 132,258 _0132 Psest_0133: Psest_0133 - type VI secretion protein, VC_A0107 family, at 132,285 to 132,791 _0133 Psest_0134: Psest_0134 - type VI secretion-associated protein, VC_A0119 family, at 132,808 to 134,370 _0134 Position (kb) 132 133Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 131.423 kb on + strand, within Psest_0132at 131.423 kb on + strand, within Psest_0132at 131.423 kb on + strand, within Psest_0132at 131.423 kb on + strand, within Psest_0132at 131.424 kb on - strand, within Psest_0132at 131.424 kb on - strand, within Psest_0132at 131.444 kb on + strand, within Psest_0132at 131.444 kb on + strand, within Psest_0132at 131.444 kb on + strand, within Psest_0132at 131.444 kb on + strand, within Psest_0132at 131.444 kb on + strand, within Psest_0132at 131.444 kb on + strand, within Psest_0132at 131.445 kb on - strand, within Psest_0132at 131.445 kb on - strand, within Psest_0132at 131.445 kb on - strand, within Psest_0132at 131.445 kb on - strand, within Psest_0132at 131.477 kb on + strand, within Psest_0132at 131.477 kb on + strand, within Psest_0132at 131.478 kb on - strand, within Psest_0132at 131.556 kb on - strand, within Psest_0132at 131.729 kb on + strand, within Psest_0132at 131.729 kb on + strand, within Psest_0132at 131.730 kb on - strand, within Psest_0132at 131.730 kb on - strand, within Psest_0132at 131.730 kb on - strand, within Psest_0132at 131.730 kb on - strand, within Psest_0132at 131.730 kb on - strand, within Psest_0132at 131.730 kb on - strand, within Psest_0132at 131.730 kb on - strand, within Psest_0132at 131.771 kb on + strand, within Psest_0132at 131.771 kb on + strand, within Psest_0132at 131.771 kb on + strand, within Psest_0132at 131.771 kb on + strand, within Psest_0132at 131.771 kb on + strand, within Psest_0132at 131.771 kb on + strand, within Psest_0132at 131.771 kb on + strand, within Psest_0132at 131.772 kb on - strand, within Psest_0132at 131.772 kb on - strand, within Psest_0132at 131.772 kb on - strand, within Psest_0132at 131.772 kb on - strand, within Psest_0132at 131.772 kb on - strand, within Psest_0132at 131.772 kb on - strand, within Psest_0132at 131.772 kb on - strand, within Psest_0132at 131.772 kb on - strand, within Psest_0132at 131.817 kb on - strand, within Psest_0132at 131.828 kb on + strand, within Psest_0132at 131.828 kb on + strand, within Psest_0132at 131.828 kb on + strand, within Psest_0132at 131.828 kb on + strand, within Psest_0132at 131.828 kb on + strand, within Psest_0132at 131.828 kb on + strand, within Psest_0132at 131.828 kb on + strand, within Psest_0132at 131.828 kb on + strand, within Psest_0132at 131.828 kb on + strand, within Psest_0132at 131.828 kb on + strand, within Psest_0132at 131.828 kb on + strand, within Psest_0132at 131.828 kb on + strand, within Psest_0132at 131.828 kb on + strand, within Psest_0132at 131.828 kb on + strand, within Psest_0132at 131.829 kb on - strand, within Psest_0132at 131.829 kb on - strand, within Psest_0132at 131.829 kb on - strand, within Psest_0132at 131.829 kb on - strand, within Psest_0132at 131.829 kb on - strand, within Psest_0132at 131.829 kb on - strand, within Psest_0132at 131.829 kb on - strand, within Psest_0132at 131.829 kb on - strand, within Psest_0132at 131.829 kb on - strand, within Psest_0132at 131.829 kb on - strand, within Psest_0132at 131.829 kb on - strand, within Psest_0132at 131.829 kb on - strand, within Psest_0132at 131.840 kb on + strand, within Psest_0132at 131.840 kb on + strand, within Psest_0132at 131.840 kb on + strand, within Psest_0132at 131.840 kb on + strand, within Psest_0132at 131.840 kb on + strand, within Psest_0132at 131.841 kb on - strand, within Psest_0132at 131.841 kb on - strand, within Psest_0132at 132.152 kb on + strandat 132.152 kb on + strandat 132.152 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.261 kb on - strandat 132.261 kb on - strandat 132.261 kb on - strandat 132.261 kb on - strandat 132.261 kb on - strandat 132.261 kb on - strandat 132.261 kb on - strandat 132.261 kb on - strandat 132.261 kb on - strandat 132.261 kb on - strandat 132.261 kb on - strandat 132.261 kb on - strandat 132.261 kb on - strandat 132.261 kb on - strandat 132.283 kb on + strandat 132.283 kb on + strandat 132.361 kb on - strand, within Psest_0133at 132.361 kb on - strand, within Psest_0133at 133.016 kb on + strand, within Psest_0134at 133.016 kb on + strand, within Psest_0134at 133.016 kb on + strand, within Psest_0134at 133.016 kb on + strand, within Psest_0134at 133.017 kb on - strand, within Psest_0134at 133.017 kb on - strand, within Psest_0134at 133.485 kb on - strand, within Psest_0134at 133.511 kb on + strand, within Psest_0134

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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131,423 + Psest_0132 0.43 -0.6
131,423 + Psest_0132 0.43 -1.8
131,423 + Psest_0132 0.43 +0.5
131,423 + Psest_0132 0.43 +1.1
131,424 - Psest_0132 0.44 -0.4
131,424 - Psest_0132 0.44 -0.5
131,444 + Psest_0132 0.45 +0.1
131,444 + Psest_0132 0.45 +0.8
131,444 + Psest_0132 0.45 +1.2
131,444 + Psest_0132 0.45 -0.9
131,444 + Psest_0132 0.45 +3.7
131,444 + Psest_0132 0.45 +0.2
131,445 - Psest_0132 0.45 +0.1
131,445 - Psest_0132 0.45 -0.0
131,445 - Psest_0132 0.45 +2.5
131,445 - Psest_0132 0.45 -1.6
131,477 + Psest_0132 0.47 -0.3
131,477 + Psest_0132 0.47 -0.2
131,478 - Psest_0132 0.47 -0.4
131,556 - Psest_0132 0.52 +1.3
131,729 + Psest_0132 0.64 -0.1
131,729 + Psest_0132 0.64 +1.2
131,730 - Psest_0132 0.64 -1.2
131,730 - Psest_0132 0.64 +0.4
131,730 - Psest_0132 0.64 -3.0
131,730 - Psest_0132 0.64 +0.5
131,730 - Psest_0132 0.64 +2.6
131,730 - Psest_0132 0.64 -0.0
131,730 - Psest_0132 0.64 +1.3
131,771 + Psest_0132 0.67 +0.5
131,771 + Psest_0132 0.67 -0.3
131,771 + Psest_0132 0.67 +0.5
131,771 + Psest_0132 0.67 +1.0
131,771 + Psest_0132 0.67 -0.5
131,771 + Psest_0132 0.67 +0.7
131,771 + Psest_0132 0.67 -0.0
131,772 - Psest_0132 0.67 +0.2
131,772 - Psest_0132 0.67 +1.1
131,772 - Psest_0132 0.67 +0.2
131,772 - Psest_0132 0.67 +0.5
131,772 - Psest_0132 0.67 -3.8
131,772 - Psest_0132 0.67 +1.3
131,772 - Psest_0132 0.67 -0.6
131,772 - Psest_0132 0.67 -0.0
131,817 - Psest_0132 0.70 -0.5
131,828 + Psest_0132 0.71 -0.6
131,828 + Psest_0132 0.71 +2.4
131,828 + Psest_0132 0.71 -1.2
131,828 + Psest_0132 0.71 +1.0
131,828 + Psest_0132 0.71 -0.3
131,828 + Psest_0132 0.71 -0.5
131,828 + Psest_0132 0.71 -0.3
131,828 + Psest_0132 0.71 -0.7
131,828 + Psest_0132 0.71 -0.9
131,828 + Psest_0132 0.71 +0.3
131,828 + Psest_0132 0.71 +0.5
131,828 + Psest_0132 0.71 -1.3
131,828 + Psest_0132 0.71 -1.7
131,828 + Psest_0132 0.71 -0.1
131,829 - Psest_0132 0.71 +0.4
131,829 - Psest_0132 0.71 -0.2
131,829 - Psest_0132 0.71 +0.8
131,829 - Psest_0132 0.71 -0.5
131,829 - Psest_0132 0.71 -2.3
131,829 - Psest_0132 0.71 +0.4
131,829 - Psest_0132 0.71 -0.9
131,829 - Psest_0132 0.71 +0.6
131,829 - Psest_0132 0.71 -0.7
131,829 - Psest_0132 0.71 +0.3
131,829 - Psest_0132 0.71 -0.8
131,829 - Psest_0132 0.71 -0.6
131,840 + Psest_0132 0.72 -0.9
131,840 + Psest_0132 0.72 -1.3
131,840 + Psest_0132 0.72 +0.7
131,840 + Psest_0132 0.72 -1.4
131,840 + Psest_0132 0.72 -0.3
131,841 - Psest_0132 0.72 +0.9
131,841 - Psest_0132 0.72 +0.3
132,152 + +0.0
132,152 + +0.7
132,152 + -0.9
132,260 + +2.1
132,260 + +1.6
132,260 + +0.1
132,260 + -0.8
132,260 + +0.1
132,260 + +0.2
132,260 + +0.4
132,260 + -0.3
132,260 + +0.6
132,260 + +1.0
132,260 + +1.7
132,260 + -0.2
132,260 + -1.6
132,260 + -0.5
132,260 + -0.5
132,260 + +0.2
132,260 + -0.4
132,260 + +0.6
132,261 - +2.6
132,261 - +1.2
132,261 - -0.1
132,261 - +0.1
132,261 - -1.1
132,261 - +0.5
132,261 - -1.7
132,261 - +0.9
132,261 - -0.9
132,261 - -2.3
132,261 - -0.6
132,261 - -0.8
132,261 - -0.3
132,261 - -1.0
132,283 + -0.6
132,283 + -1.3
132,361 - Psest_0133 0.15 -2.0
132,361 - Psest_0133 0.15 -1.7
133,016 + Psest_0134 0.13 -0.8
133,016 + Psest_0134 0.13 -1.5
133,016 + Psest_0134 0.13 -0.7
133,016 + Psest_0134 0.13 -0.5
133,017 - Psest_0134 0.13 +1.4
133,017 - Psest_0134 0.13 -1.8
133,485 - Psest_0134 0.43 -0.7
133,511 + Psest_0134 0.45 -1.6

Or see this region's nucleotide sequence