Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1041

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1040 and Psest_1041 overlap by 1 nucleotidesPsest_1041 and Psest_1042 are separated by 17 nucleotidesPsest_1042 and Psest_1043 are separated by 119 nucleotides Psest_1040: Psest_1040 - Sulfite oxidase and related enzymes, at 1,125,881 to 1,126,888 _1040 Psest_1041: Psest_1041 - Predicted membrane protein, at 1,126,888 to 1,127,508 _1041 Psest_1042: Psest_1042 - hypothetical protein, at 1,127,526 to 1,127,966 _1042 Psest_1043: Psest_1043 - 16S rRNA, at 1,128,086 to 1,129,503 _1043 Position (kb) 1126 1127 1128Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1126.151 kb on + strand, within Psest_1040at 1126.151 kb on + strand, within Psest_1040at 1126.152 kb on - strand, within Psest_1040at 1126.496 kb on + strand, within Psest_1040at 1126.496 kb on + strand, within Psest_1040at 1126.496 kb on + strand, within Psest_1040at 1126.497 kb on - strand, within Psest_1040at 1126.497 kb on - strand, within Psest_1040at 1126.555 kb on + strand, within Psest_1040at 1126.555 kb on + strand, within Psest_1040at 1126.555 kb on + strand, within Psest_1040at 1126.556 kb on - strand, within Psest_1040at 1126.559 kb on + strand, within Psest_1040at 1126.559 kb on + strand, within Psest_1040at 1126.560 kb on - strand, within Psest_1040at 1126.560 kb on - strand, within Psest_1040at 1126.560 kb on - strand, within Psest_1040at 1126.560 kb on - strand, within Psest_1040at 1126.560 kb on - strand, within Psest_1040at 1126.560 kb on - strand, within Psest_1040at 1126.560 kb on - strand, within Psest_1040at 1126.619 kb on + strand, within Psest_1040at 1126.619 kb on + strand, within Psest_1040at 1126.662 kb on + strand, within Psest_1040at 1126.662 kb on + strand, within Psest_1040at 1126.718 kb on + strand, within Psest_1040at 1126.718 kb on + strand, within Psest_1040at 1126.718 kb on + strand, within Psest_1040at 1126.741 kb on - strand, within Psest_1040at 1126.786 kb on + strand, within Psest_1040at 1126.786 kb on + strand, within Psest_1040at 1126.787 kb on - strand, within Psest_1040at 1126.854 kb on + strandat 1126.854 kb on + strandat 1126.854 kb on + strandat 1126.854 kb on + strandat 1126.855 kb on - strandat 1126.856 kb on + strandat 1126.856 kb on + strandat 1126.856 kb on + strandat 1126.856 kb on + strandat 1126.856 kb on + strandat 1126.856 kb on + strandat 1126.856 kb on + strandat 1126.856 kb on + strandat 1126.856 kb on + strandat 1126.856 kb on + strandat 1126.857 kb on - strandat 1126.857 kb on - strandat 1126.857 kb on - strandat 1126.857 kb on - strandat 1126.857 kb on - strandat 1126.857 kb on - strandat 1126.857 kb on - strandat 1126.857 kb on - strandat 1126.883 kb on + strandat 1126.884 kb on - strandat 1126.945 kb on + strandat 1126.946 kb on - strandat 1126.955 kb on - strand, within Psest_1041at 1126.955 kb on - strand, within Psest_1041at 1127.127 kb on + strand, within Psest_1041at 1127.127 kb on + strand, within Psest_1041at 1127.127 kb on + strand, within Psest_1041at 1127.127 kb on + strand, within Psest_1041at 1127.128 kb on - strand, within Psest_1041at 1127.131 kb on + strand, within Psest_1041at 1127.131 kb on + strand, within Psest_1041at 1127.131 kb on + strand, within Psest_1041at 1127.141 kb on + strand, within Psest_1041at 1127.141 kb on + strand, within Psest_1041at 1127.141 kb on + strand, within Psest_1041at 1127.141 kb on + strand, within Psest_1041at 1127.141 kb on + strand, within Psest_1041at 1127.141 kb on + strand, within Psest_1041at 1127.141 kb on + strand, within Psest_1041at 1127.141 kb on + strand, within Psest_1041at 1127.142 kb on - strand, within Psest_1041at 1127.142 kb on - strand, within Psest_1041at 1127.142 kb on - strand, within Psest_1041at 1127.148 kb on - strand, within Psest_1041at 1127.148 kb on - strand, within Psest_1041at 1127.148 kb on - strand, within Psest_1041at 1127.148 kb on - strand, within Psest_1041at 1127.155 kb on + strand, within Psest_1041at 1127.155 kb on + strand, within Psest_1041at 1127.155 kb on + strand, within Psest_1041at 1127.155 kb on + strand, within Psest_1041at 1127.155 kb on + strand, within Psest_1041at 1127.156 kb on - strand, within Psest_1041at 1127.156 kb on - strand, within Psest_1041at 1127.161 kb on + strand, within Psest_1041at 1127.161 kb on + strand, within Psest_1041at 1127.161 kb on + strand, within Psest_1041at 1127.162 kb on - strand, within Psest_1041at 1127.162 kb on - strand, within Psest_1041at 1127.184 kb on - strand, within Psest_1041at 1127.204 kb on + strand, within Psest_1041at 1127.204 kb on + strand, within Psest_1041at 1127.204 kb on + strand, within Psest_1041at 1127.205 kb on - strand, within Psest_1041at 1127.207 kb on + strand, within Psest_1041at 1127.208 kb on - strand, within Psest_1041at 1127.218 kb on + strand, within Psest_1041at 1127.218 kb on + strand, within Psest_1041at 1127.218 kb on + strand, within Psest_1041at 1127.218 kb on + strand, within Psest_1041at 1127.219 kb on - strand, within Psest_1041at 1127.219 kb on - strand, within Psest_1041at 1127.219 kb on - strand, within Psest_1041at 1127.219 kb on - strand, within Psest_1041at 1127.220 kb on + strand, within Psest_1041at 1127.220 kb on + strand, within Psest_1041at 1127.220 kb on + strand, within Psest_1041at 1127.220 kb on + strand, within Psest_1041at 1127.220 kb on + strand, within Psest_1041at 1127.220 kb on + strand, within Psest_1041at 1127.220 kb on + strand, within Psest_1041at 1127.220 kb on + strand, within Psest_1041at 1127.220 kb on + strand, within Psest_1041at 1127.220 kb on + strand, within Psest_1041at 1127.220 kb on + strand, within Psest_1041at 1127.220 kb on + strand, within Psest_1041at 1127.220 kb on + strand, within Psest_1041at 1127.220 kb on + strand, within Psest_1041at 1127.220 kb on + strand, within Psest_1041at 1127.220 kb on + strand, within Psest_1041at 1127.220 kb on + strand, within Psest_1041at 1127.220 kb on + strand, within Psest_1041at 1127.220 kb on + strand, within Psest_1041at 1127.221 kb on - strand, within Psest_1041at 1127.221 kb on - strand, within Psest_1041at 1127.221 kb on - strand, within Psest_1041at 1127.221 kb on - strand, within Psest_1041at 1127.221 kb on - strand, within Psest_1041at 1127.221 kb on - strand, within Psest_1041at 1127.221 kb on - strand, within Psest_1041at 1127.221 kb on - strand, within Psest_1041at 1127.221 kb on - strand, within Psest_1041at 1127.221 kb on - strand, within Psest_1041at 1127.221 kb on - strand, within Psest_1041at 1127.221 kb on - strand, within Psest_1041at 1127.221 kb on - strand, within Psest_1041at 1127.221 kb on - strand, within Psest_1041at 1127.221 kb on - strand, within Psest_1041at 1127.221 kb on - strand, within Psest_1041at 1127.221 kb on - strand, within Psest_1041at 1127.221 kb on - strandat 1127.221 kb on - strand, within Psest_1041at 1127.221 kb on - strand, within Psest_1041at 1127.222 kb on + strand, within Psest_1041at 1127.222 kb on + strand, within Psest_1041at 1127.222 kb on + strand, within Psest_1041at 1127.222 kb on + strand, within Psest_1041at 1127.222 kb on + strand, within Psest_1041at 1127.222 kb on + strand, within Psest_1041at 1127.223 kb on - strand, within Psest_1041at 1127.223 kb on - strand, within Psest_1041at 1127.228 kb on + strand, within Psest_1041at 1127.229 kb on - strand, within Psest_1041at 1127.229 kb on - strand, within Psest_1041at 1127.333 kb on - strand, within Psest_1041at 1127.333 kb on - strand, within Psest_1041at 1127.333 kb on - strand, within Psest_1041at 1127.354 kb on + strand, within Psest_1041at 1127.355 kb on - strand, within Psest_1041at 1127.355 kb on - strand, within Psest_1041at 1127.377 kb on - strand, within Psest_1041

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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1,126,151 + Psest_1040 0.27 +0.8
1,126,151 + Psest_1040 0.27 -0.9
1,126,152 - Psest_1040 0.27 -0.6
1,126,496 + Psest_1040 0.61 +1.2
1,126,496 + Psest_1040 0.61 +0.3
1,126,496 + Psest_1040 0.61 +1.1
1,126,497 - Psest_1040 0.61 -0.9
1,126,497 - Psest_1040 0.61 +0.5
1,126,555 + Psest_1040 0.67 +0.8
1,126,555 + Psest_1040 0.67 +2.6
1,126,555 + Psest_1040 0.67 +0.5
1,126,556 - Psest_1040 0.67 -0.9
1,126,559 + Psest_1040 0.67 -0.3
1,126,559 + Psest_1040 0.67 -2.1
1,126,560 - Psest_1040 0.67 +0.5
1,126,560 - Psest_1040 0.67 -0.7
1,126,560 - Psest_1040 0.67 -1.8
1,126,560 - Psest_1040 0.67 -1.3
1,126,560 - Psest_1040 0.67 -0.6
1,126,560 - Psest_1040 0.67 -0.0
1,126,560 - Psest_1040 0.67 +0.5
1,126,619 + Psest_1040 0.73 +0.6
1,126,619 + Psest_1040 0.73 +1.4
1,126,662 + Psest_1040 0.77 +0.1
1,126,662 + Psest_1040 0.77 -0.9
1,126,718 + Psest_1040 0.83 -0.7
1,126,718 + Psest_1040 0.83 +0.1
1,126,718 + Psest_1040 0.83 +2.1
1,126,741 - Psest_1040 0.85 +0.5
1,126,786 + Psest_1040 0.90 +0.9
1,126,786 + Psest_1040 0.90 +0.1
1,126,787 - Psest_1040 0.90 -0.6
1,126,854 + -0.3
1,126,854 + +1.1
1,126,854 + +0.2
1,126,854 + +0.4
1,126,855 - -0.9
1,126,856 + +0.7
1,126,856 + -1.8
1,126,856 + -1.7
1,126,856 + -0.9
1,126,856 + +1.7
1,126,856 + -1.0
1,126,856 + -0.4
1,126,856 + +0.0
1,126,856 + +1.2
1,126,856 + -0.9
1,126,857 - -2.5
1,126,857 - +0.6
1,126,857 - -1.5
1,126,857 - -0.5
1,126,857 - +2.2
1,126,857 - -2.1
1,126,857 - -0.3
1,126,857 - -0.4
1,126,883 + +0.9
1,126,884 - -1.5
1,126,945 + +0.0
1,126,946 - -0.5
1,126,955 - Psest_1041 0.11 -1.5
1,126,955 - Psest_1041 0.11 +1.0
1,127,127 + Psest_1041 0.38 +0.5
1,127,127 + Psest_1041 0.38 +0.8
1,127,127 + Psest_1041 0.38 -0.0
1,127,127 + Psest_1041 0.38 +0.0
1,127,128 - Psest_1041 0.39 +0.0
1,127,131 + Psest_1041 0.39 +1.1
1,127,131 + Psest_1041 0.39 -2.4
1,127,131 + Psest_1041 0.39 +0.4
1,127,141 + Psest_1041 0.41 +0.3
1,127,141 + Psest_1041 0.41 +2.4
1,127,141 + Psest_1041 0.41 +1.0
1,127,141 + Psest_1041 0.41 -0.9
1,127,141 + Psest_1041 0.41 -0.2
1,127,141 + Psest_1041 0.41 -1.6
1,127,141 + Psest_1041 0.41 +0.4
1,127,141 + Psest_1041 0.41 -1.4
1,127,142 - Psest_1041 0.41 +1.0
1,127,142 - Psest_1041 0.41 +1.2
1,127,142 - Psest_1041 0.41 -0.1
1,127,148 - Psest_1041 0.42 +1.0
1,127,148 - Psest_1041 0.42 +1.3
1,127,148 - Psest_1041 0.42 +0.2
1,127,148 - Psest_1041 0.42 -0.0
1,127,155 + Psest_1041 0.43 +0.4
1,127,155 + Psest_1041 0.43 -0.1
1,127,155 + Psest_1041 0.43 -0.6
1,127,155 + Psest_1041 0.43 +1.2
1,127,155 + Psest_1041 0.43 -0.3
1,127,156 - Psest_1041 0.43 +1.6
1,127,156 - Psest_1041 0.43 -0.5
1,127,161 + Psest_1041 0.44 +0.6
1,127,161 + Psest_1041 0.44 +0.0
1,127,161 + Psest_1041 0.44 -0.8
1,127,162 - Psest_1041 0.44 -0.6
1,127,162 - Psest_1041 0.44 -0.1
1,127,184 - Psest_1041 0.48 -0.0
1,127,204 + Psest_1041 0.51 -0.5
1,127,204 + Psest_1041 0.51 -0.5
1,127,204 + Psest_1041 0.51 +0.5
1,127,205 - Psest_1041 0.51 +0.9
1,127,207 + Psest_1041 0.51 -1.5
1,127,208 - Psest_1041 0.52 -0.2
1,127,218 + Psest_1041 0.53 +1.4
1,127,218 + Psest_1041 0.53 -0.6
1,127,218 + Psest_1041 0.53 +1.0
1,127,218 + Psest_1041 0.53 -0.3
1,127,219 - Psest_1041 0.53 -1.5
1,127,219 - Psest_1041 0.53 -0.4
1,127,219 - Psest_1041 0.53 -1.3
1,127,219 - Psest_1041 0.53 +0.1
1,127,220 + Psest_1041 0.53 -0.6
1,127,220 + Psest_1041 0.53 -2.0
1,127,220 + Psest_1041 0.53 +0.0
1,127,220 + Psest_1041 0.53 -0.4
1,127,220 + Psest_1041 0.53 -0.1
1,127,220 + Psest_1041 0.53 -0.3
1,127,220 + Psest_1041 0.53 +0.6
1,127,220 + Psest_1041 0.53 +0.5
1,127,220 + Psest_1041 0.53 -0.8
1,127,220 + Psest_1041 0.53 +0.4
1,127,220 + Psest_1041 0.53 +0.9
1,127,220 + Psest_1041 0.53 +0.4
1,127,220 + Psest_1041 0.53 +3.1
1,127,220 + Psest_1041 0.53 +0.4
1,127,220 + Psest_1041 0.53 -2.6
1,127,220 + Psest_1041 0.53 +0.3
1,127,220 + Psest_1041 0.53 -0.9
1,127,220 + Psest_1041 0.53 +1.2
1,127,220 + Psest_1041 0.53 -0.5
1,127,221 - Psest_1041 0.54 -0.5
1,127,221 - Psest_1041 0.54 +0.5
1,127,221 - Psest_1041 0.54 -2.6
1,127,221 - Psest_1041 0.54 -0.3
1,127,221 - Psest_1041 0.54 -0.6
1,127,221 - Psest_1041 0.54 -0.8
1,127,221 - Psest_1041 0.54 +0.3
1,127,221 - Psest_1041 0.54 -1.2
1,127,221 - Psest_1041 0.54 -0.6
1,127,221 - Psest_1041 0.54 +0.6
1,127,221 - Psest_1041 0.54 +0.3
1,127,221 - Psest_1041 0.54 -0.2
1,127,221 - Psest_1041 0.54 +0.6
1,127,221 - Psest_1041 0.54 +0.0
1,127,221 - Psest_1041 0.54 +0.3
1,127,221 - Psest_1041 0.54 +0.3
1,127,221 - Psest_1041 0.54 +1.0
1,127,221 - -0.5
1,127,221 - Psest_1041 0.54 +0.6
1,127,221 - Psest_1041 0.54 +0.7
1,127,222 + Psest_1041 0.54 +0.3
1,127,222 + Psest_1041 0.54 -1.0
1,127,222 + Psest_1041 0.54 -1.8
1,127,222 + Psest_1041 0.54 -1.0
1,127,222 + Psest_1041 0.54 -0.5
1,127,222 + Psest_1041 0.54 -0.4
1,127,223 - Psest_1041 0.54 -1.2
1,127,223 - Psest_1041 0.54 -0.6
1,127,228 + Psest_1041 0.55 +0.4
1,127,229 - Psest_1041 0.55 +0.9
1,127,229 - Psest_1041 0.55 -0.4
1,127,333 - Psest_1041 0.72 +2.8
1,127,333 - Psest_1041 0.72 +0.8
1,127,333 - Psest_1041 0.72 +0.8
1,127,354 + Psest_1041 0.75 -0.5
1,127,355 - Psest_1041 0.75 -0.5
1,127,355 - Psest_1041 0.75 +1.3
1,127,377 - Psest_1041 0.79 +1.0

Or see this region's nucleotide sequence